Atherosclerosis and Lipoproteins |
From the Lipoprotein and Atherosclerosis Research Group University of Ottawa Heart Institute (R.S.K., B.H., N.K., R.M., Y.L.M.), the Departments of Pathology and Laboratory Medicine (Y.L.M.) and of Medicine, Division of Cardiology (R.M.), University of Ottawa, Ontario, Canada; and GlaxoSmithKline (L.S.-B., M.J., M.B., K.S., M.R.H., D.S.), King of Prussia, Pa.
Correspondence to Y.L. Marcel or R. McPherson, University of Ottawa Heart Institute, 40 Ruskin Street, Ottawa, Ontario, K1Y 4W7, Canada. E-mail ylmarcel{at}ottawaheart.ca or rmcpherson@ottawaheart.ca
| Abstract |
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Methods and Results— Comparative transcriptome analyses of monocyte-derived macrophages (MDM) from a large population of low HDL-C subjects and age- and sex-matched controls revealed a cluster of inflammatory genes highly expressed in low HDL-C subjects. The expression levels of peroxisome proliferator activated receptor (PPAR)
and several antioxidant metallothionein genes were decreased in MDM from all low HDL-C groups compared with controls, as was the expression of other genes regulated by PPAR
, including CD36, adipocyte fatty acid binding protein (FABP4), and adipophilin (ADFP). In contrast, PPAR
expression was increased in MDM from low HDL-C groups. Quantitative RT-PCR corroborated all major findings from the microarray analysis in two separate patient cohorts. Expression of several inflammatory cytokine genes including interleukin 1β, interleukin 8, and tumor necrosis factor
were highly increased in low HDL-C subjects.
Conclusions— The activated proinflammatory state of monocytes and MDM in low HDL-C subjects constitutes a novel parameter of risk associated with HDL deficiency, related to altered expression of metallothionein genes and the reciprocal regulation of PPAR
and PPAR
.
We demonstrate that cholesterol loaded monocyte-derived macrophages from low HDL-C subjects exhibit a complex inflammatory gene response, related to altered expression of PPAR
, PPAR
, and a cluster of metallothionein genes. Our results suggest that a heightened macrophage inflammatory response may contribute to the pathophysiological consequences of HDL deficiency.
Key Words: lipoproteins inflammation cholesterol genes
| Introduction |
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Here we have studied a previously defined cohort of subjects with low HDL and controls that was extensively characterized in terms of incidence of nonsynonymous mutations in apoA-I, ABCA1, LCAT, and PLTP17 and in whom the incidence of cholesterol efflux defects from monocyte-derived macrophages (MDM) had been defined.17a This study has established the high prevalence of efflux defects in low HDL syndromes that are not attributable to nonsynonymous mutations in ABCA1. MDM from the low HDL and control subjects were used to evaluate gene expression by microarray analysis as a function of efflux defects, functional mutations in ABCA1, and absence of mutations in the other candidate genes. Here, we demonstrate that cholesterol loaded MDM from low HDL-C subjects exhibit a complex inflammatory gene response, independent of efflux defects, but related to altered expression of PPAR
, PPAR
, and a cluster of metallothionein genes. Our results suggest that a heightened macrophage inflammatory response may contribute to the pathophysiological consequences of HDL deficiency.
| Experimental Procedures |
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Selection of Low HDL-C Subjects and Controls
Low HDL-C subjects were selected from consecutive referrals to the Heart Institute Lipid Clinic based on the following criteria: White, untreated values for HDL-C <5th%ile, TG <95th%ile (most <75th%ile), LDL-C <75th%ile adjusted for age and sex. Exclusion criteria included diabetes and clinical conditions or medications causative of low HDL. Control subjects were healthy normolipemic volunteers of the same ethnic background recruited from Ottawa region. The study was approved by the University of Ottawa Heart Institute Human Research Ethics Committee, and written informed consent was obtained from all participants. Further details are provided in supplemental Table I and supplemental methods.
Monocyte-Derived Macrophages
Monocytes were isolated over Histopaque 1077 and plated at 4.4x106 cells/mL in 48-well plates (efflux assays) or 12-well plates (mRNA isolation). Peripheral blood mononuclear cells (PBMCs) were plated for 48 hours before harvesting of mRNA. MDM were fed every 48 hours and cultured for 12 days to differentiate monocytes into macrophages.
Macrophage Cholesterol Loading and Efflux Assay
Cells were incubated for 36 hours with acetylated LDL (AcLDL) (37.5 µg AcLDL/mL) labeled with 3H-cholesterol, equilibrated in media with 2 mg/mL BSA for 12 hours and mRNA was isolated. For efflux assay, cells were incubated without and with apoA-I (50 µg/mL) in RPMI/BSA for 2 hours.
Microarray Analysis
RNA was assessed with an Agilent 2100 Bioanalyzer (Agilent Technologies) and RiboGreen RNA quantitation reagent (Molecular Probes). Affymetrix human U133A GeneChips (Affymetrix Inc) were used.
Taq-Man Quantitative Real-Time PCR
Total RNA (1 mg) was converted to cDNA using a High Capacity cDNA Archive Kit (Applied Biosystems) and the equivalent of 10 ng per well was arrayed into high-density 384-well plates using a Biomek FX robot (Beckman Coulter). Quantitative RT-PCR was carried out using a 7900HT Sequence Detector System (Applied Biosystems).
Statistical Analysis
The Resolver error model18 was used to select probesets differing between experimental groups (Figure 1). Each group was compared with the control group using a cutoff of P<0.05 and xDEV greater than 2.5 in at least one comparison. Average linkage clustering, using the Pearson correlation, was applied and the data were viewed by Tree view (Treeview 1.60; Michael Eisen, Stanford.edu).
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| Results |
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Microarray Transcriptome Analysis
MDM from 6 to 8 subjects in each group (all age- and sex- matched) were loaded with AcLDL. mRNA was isolated from cholesterol loaded MDM and analyzed using Affymetrix GeneChips (see Methods). Hierarchical clustering of significantly differing gene expression (P<0.05) for all subjects in all groups demonstrated significant homogeneity within each of the groups, with the exception of 2 subjects in group A (low efflux, normal ABCA1), who demonstrated distinct profiles with extremely altered expression of liver X receptor (LXR) and LXR-regulated genes. Sequencing of coding regions and 2 kb of the 5'flanking sequence of the LXR gene in these 2 subjects failed to identify any unique sequence variant. They were not included with the rest of group A (low efflux, normal ABCA1) (identified as A [6]) in the subsequent analyses because of possible skewing of the correlation.
The first microarray study of the 3 low HDL-C groups compared with controls demonstrated the relative homogeneity within groups and consistent differences between groups, as indicated by several highlights emerging from the hierarchical cluster analysis (Figure 1). First, a striking cluster consisting of the metallothionein-1 (MT1) genes was uniformly lower in MDM from all low HDL-C subjects (Figure 1, bottom panel). Secondly, the cluster analysis revealed increased expression of a group of cholesterol regulated genes in the two efflux defective groups, consistent with impaired intracellular trafficking of cholesterol (Figure 1, top panel).
Importantly, a remarkable cluster of highly expressed inflammatory genes was evident in MDM of low HDL-C subjects without ABCA1 mutations (groups A and C) compared with controls (Figure 1, middle panel). The same groups compared with controls had decreased expression of PPAR
, a nuclear receptor known to repress transcriptional activation of inflammatory response genes in macrophages.19,20 In contrast, PPAR
was increased in low HDL-C subjects compared with controls (Figure 1, top panel). We then examined the relationships of PPAR
and PPAR
mRNA expression to that of other genes tested in the microarray. Based on a Pearson correlation coefficient of r>0.6, PPAR
correlated positively with 105 genes and negatively with 21. Of these, data for genes associated with cholesterol metabolism or free radical scavenging are shown in Table 1. In this set, the metallothionein genes, adipophilin (ADFP), CD36, adipocyte fatty acid binding protein (FABP4), ATP binding cassette protein A1 (ABCA1), and liver X receptor (LXR
) all emerged as strongly positively correlated with PPAR
expression. Most of these same genes were negatively correlated with PPAR
(Table 1), suggesting a reciprocal regulatory relationship between PPAR
and PPAR
. On the other hand, PPAR
positively correlated with 138 genes (Table 1), which included a large number of cholesterol synthesis and cholesterol metabolism related genes, including low density lipoprotein receptor (LDLR), 3-hydroxy-3-methylglutaryl (HMG)-coenzyme A (CoA) reductase (HMGCR), and INSIG1.
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The expression of selected genes, representative of the different clusters, was verified by TaqMan real-time PCR, and the results corroborated the major findings from this first series of microarray experiments (Table 2). MT1E expression was low in all low HDL-C groups compared with control. PPAR
expression was reduced in MDM from low HDL-C subjects, as were FABP4 and ADFP, genes regulated by PPAR
. In contrast, PPAR
was expressed at higher levels in low HDL-C groups as compared with controls. Again, the inflammatory cytokines, interleukin 1β (IL-1β), IL-8, tumor necrosis factor
(TNF-
), as well as superoxide dismutase 2 (SOD2) were significantly increased in low HDL-C subjects (Table 2).
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To validate these observations, a second series of duplicate transcriptome analyses were carried out on MDM from an additional 21 low HDL-C subjects and 18 controls, genotyped and phenotyped as before (group A': low HDL-C, low efflux, normal ABCA1 [10 subjects], group C' low HDL-C, normal efflux [11 subjects], and group D' normal controls [18 subjects]). Overall, the microarray results of this second series corroborated those of series 1 and revealed the same clusters of overexpressed and downregulated genes in the different groups. A heat map of the composite microarray for both series 1 and series 2 cohorts vividly illustrated the prominence of the inflammation phenotype in low HDL groups and its independence of efflux phenotype (Figure 2).
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Unsupervised methods were also used to further analyze the complete dataset. Small but consistent changes between the two datasets led to adoption of an approach where the datasets were analyzed singly, and in concert, using K-means clustering. Probesets, which were consistently assigned as members of similarly behaving clusters in each of the 3 comparisons, were assigned into one of 5 patterns (supplemental Table II). Only 2 of these patterns show clear discrimination between low-HDL and normal groups, and these correspond to those previously identified from the supervised analysis of set 1. Comparisons to GO categories using Fisher exact test (supplemental Table II) confirmed our interpretations: (1) mRNA expression of many inflammation genes is increased in low-HDL subjects in the A and C groups; (2) a general gene cluster corresponding to energy metabolism with PPAR
at its center presented with reduced expression in most low HDL subjects. For further analysis, see the online data supplements for supplemental Results to Microarray Analysis.
TaqMan real-time PCR studies of the second series of low HDL and control subjects were consistent with the initial results and showed that inflammation-related genes were significantly increased in MDM derived from low HDL-C subjects with normal efflux. (ie, Group C; Table 2). The expression of PPAR
and certain PPAR
regulated genes including FABP4 were decreased in group C subjects (low HDL-C, normal efflux), whereas expression of PPAR
was increased in all low HDL-C subjects. The expression of inflammatory cytokines IL-1β and IL-8 was significantly higher in low HDL-C subjects in group C (low HDL-C, normal efflux) versus controls. To evaluate whether the proinflammatory phenotype might precede differentiation of monocytes and loading with cholesterol, low HDL-C subjects of group A (low HDL-C, low efflux) and controls were restudied. Peripheral blood mononuclear cells (PBMCs; including T-cells and monocytes) were isolated and cultured for 2 days in normal growth medium. Compared with controls, non–cholesterol loaded PBMCs from low HDL-C subjects demonstrated significantly higher expression of both IL-1β and IL-8 by quantitative RT-PCR (3.0- and 2.6-fold, respectively, P<0.01). Separately isolated and cultured MDM from low HDL-C subjects responded to cholesterol loading as expected by increasing ABCA1 and ABCG1 and decreasing HMG-CoA reductase, but the expression of MTE1 and proinflammatory genes did not increase with cholesterol loading (supplemental Table III). This indicates that reduced expression of metallothionein and elevated expression of inflammatory genes in MDM from low HDL-C subjects is not a direct consequence of cholesterol loading (supplemental Table II). Thus, the proinflammatory expression profile appears to be a constitutive feature of PBMC from low HDL-C subjects.
| Discussion |
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We consistently observed decreased expression of a cluster of metallothionein genes, which encode for a family of small proteins characterized by a high metal [Zn(II), Cu(I)] content that contribute to cellular protection from reactive oxygen species.25,26 They are free radical scavengers and have both antioxidant and antiapoptotic functions.27 Metallothionein gene expression was closely correlated with that of PPAR
(r=0.83 for MTE1), whereas expression of PPAR
was negatively correlated with that of MTE1 (r=–0.67 for MTE1). The basal transcription of PPAR
is negatively regulated by cellular cholesterol28 and was found to be decreased in AcLDL-treated macrophages.29 That its expression is further reduced in all low HDL-C groups compared with controls, as observed here, is significant. The lower PPAR
expression is consistent with the observed decrease of PPAR
-regulated genes, ADFP, CD36, ABCG1, and ABCA1.30,31 PPAR
is a general antiinflammatory regulator; it increases the expression of proteins involved in reverse cholesterol transport32 and suppresses proinflammatory signals.32,33 Metallothioneins have also been shown to decrease the expression of proinflammatory cytokines in mice with experimental autoimmune encephalitis.34 Thus, the low expression of both metallothioneins and PPAR
in monocyte-derived macrophages from low HDL-C subjects may be causally linked to the proinflammatory transcriptome profile in these cells.
FABP4, a PPAR
regulated gene, was the most prominently downregulated gene in all low HDL-C groups compared with control. FABP4 facilitates transport of fatty acid ligands to the nucleus,35,36 where it interacts directly with PPAR
.37,38 Various data support the concept that FABP4 is at the crossroads of 2 central pathways in macrophages, where it coordinates cholesterol metabolism and inflammatory response.39 In mice, it appears that FABP4 is required for expression of inflammatory cytokines and/or chemoattractants in macrophages and adipose tissue. Our findings that macrophages from low HDL-C subjects have decreased expression of both PPAR
and FABP4 and elevated expression of TNF-
and IL-1β suggest that the observed differences in cytokine expression in low HDL-C versus control macrophages are related to altered expression of MTE1 and/or PPAR
and FABP4.
In contrast to PPAR
and FABP4, PPAR
expression was increased in cholesterol-loaded macrophages from low HDL-C subjects compared with controls (Table 2). PPAR
agonists significantly increase HDL-C levels in both insulin-resistant rhesus monkeys40 and obese mice,41 whereas PPAR
agonists reduce cholesterol efflux and promote lipid accumulation in human macrophages.42 Human and mouse macrophages respond differently to PPAR
, the function of which in mice may overlap with that of PPAR
in the regulation of genes related to cholesterol efflux. The role of PPAR
in human macrophages remains unresolved.43 In our study, PPAR
expression strongly and positively correlated with the expression level of many cholesterol synthesis and metabolism genes, an effect also noted recently by others.44 The relationship of PPAR
to inflammation has been previously established in mice: macrophages overexpressing PPAR
display increased production of inflammatory proteins, while genetic ablation of PPAR
increases the availability of transcriptional repressors, resulting in decreased macrophage expression of MCP-1, IL-1β, matrix metalloproteinase (MMP)-9, and decreased lesion area.45 In the present study, we observed higher expression of both PPAR
and inflammatory cytokines in cholesterol-loaded macrophages of low HDL-C subjects compared with controls. Considered in the context of the observations in PPAR
KO mice, elevated PPAR
expression may be partly responsible for the observed increase in inflammatory cytokine expression in macrophages from subjects with low HDL-C.
Interestingly, the mRNA expression of neither PPAR
nor PPAR
correlated with that of individual inflammation genes, indicating that neither has an independent influence on inflammatory gene expression, but implying that they are major coregulators of lipid homeostasis in MDM: PPAR
regulates genes influencing lipid uptake (CD36), storage (ADFP), and efflux (LXR
),32 which directly upregulates ABCA1 and ABCG1. PPAR
negatively regulates those same genes and positively controls cholesterol metabolism. We hypothesize that the expression of the antioxidant metallothionein genes and the reciprocal relationship between PPAR
and PPAR
are major determinants of the MDM inflammatory response. It is worth noting that although unliganded PPAR
levels correlate with inflammatory gene expression in mouse macrophages, activation of PPAR
in mouse macrophages by the synthetic agonist GW501516 attenuates inflammatory gene expression.45
In conclusion, we have demonstrated the increased expression of proinflammatory genes in MDM from duplicate cohorts of well characterized subjects with low HDL-C as compared with age and sex matched controls. The proinflammatory expression profile appears to be a constitutive feature of PBMCs from low HDL-C subjects which may be established in response to genetic and nongenetic factors during the differentiation of monocyte precursors in bone marrow. Notably, neither cholesterol loading (supplemental Table II) nor differentiation of PBMCs into MDM is a prerequisite. Furthermore, this proinflammatory phenotype is independent of cholesterol efflux defects and of mutations in specific candidate genes. We propose that the activated proinflammatory state of monocytes and the heightened macrophage inflammatory response in low HDL-C subjects may contribute to the pathophysiological consequences of low HDL. This constitutes a novel parameter of risk associated with HDL deficiency.
| Acknowledgments |
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This work was supported by a Grant from the Heart and Stroke Foundation of Ontario (T5911) to Y.L.M. and R.M.P., a CIHR Grant(44359) to Y.L.M., and a CIHR-Industry grant to Y.L.M. This work was also supported in part by GlaxoSmithKline Canada.
Disclosures
None.
| Footnotes |
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Original received October 16, 2006; final version accepted February 4, 2007.
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