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Arteriosclerosis, Thrombosis, and Vascular Biology. 2001;21:985-990

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(Arteriosclerosis, Thrombosis, and Vascular Biology. 2001;21:985.)
© 2001 American Heart Association, Inc.


Atherosclerosis and Lipoproteins

Point Mutation (-69 G->A) in the Promoter Region of Cholesteryl Ester Transfer Protein Gene in Japanese Hyperalphalipoproteinemic Subjects

Makoto Nagano; Shizuya Yamashita; Ken-ichi Hirano; Takeshi Kujiraoka; Mayumi Ito; Yukiko Sagehashi; Hiroaki Hattori; Norimichi Nakajima; Takao Maruyama; Naohiko Sakai; Tohru Egashira; Yuji Matsuzawa

From the Research Department, R&D Center, BML, Saitama (M.N., T.K., M.I., Y.S., H.H., T.E.); the Department of Internal Medicine and Molecular Science, Graduate School of Medicine, Osaka University, Osaka (S.Y., K.H., T.M., N.S.); and Nakajima Clinic, Akita (N.N.), Japan.

Correspondence to Shizuya Yamashita, MD, PhD, Department of Internal Medicine and Molecular Science, Graduate School of Medicine, Osaka University, 2-2 Yamada-oka, Suita, Osaka 565-0871, Japan. E-mail shizu{at}imed2.med.osaka-u.ac.jp


*    Abstract
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*Abstract
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Abstract—Cholesteryl ester transfer protein (CETP) transfers cholesteryl ester (CE) from HDL to apolipoprotein (apo) B–containing lipoproteins and plays a crucial role in reverse cholesterol transport, which is a major protective system against atherosclerosis. Genetic CETP deficiency is the most common cause of a marked hyperalphalipoproteinemia (HALP) in the Japanese, and various mutations have been identified in the coding region as well as in the exon/intron boundaries in the CETP gene. In the present study, we identified a novel mutation in the promoter region of the CETP gene. This mutation was a G-to-A substitution at the -69 nucleotide of the promoter region (-69 G->A), corresponding to the second nucleotide of the PEA3/ETS binding site (CGGAA) located upstream of the putative TATA box. Four (2.0%) of 196 unrelated subjects with a marked HALP (HDL cholesterol >=2.59 mmol/L=100 mg/dL) were revealed to be heterozygous for the -69 G->A mutation, and the allelic frequency of the mutant was 0.0102 in the subjects with a marked HALP. The subjects with the -69 G->A mutation had low plasma CETP levels. Reporter gene assay showed that this mutation markedly reduced the transcriptional activities in HepG2 cells (8% of wild type). These results suggested that this mutation would be dominant negative. In conclusion, a novel -69 G->A mutation in the CETP gene causes the decreased transcriptional activity leading to HALP.


Key Words: cholesteryl ester transfer protein deficiency • hyperalphalipoproteinemia • mutation • promoter • PEA3/ETS binding site


*    Introduction
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*Introduction
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Cholesteryl ester transfer protein (CETP) is a plasma glycoprotein that catalyzes the transfer of cholesteryl ester (CE) from HDL to apolipoprotein (apo) B–containing lipoproteins and is one of the major determinants of plasma HDL cholesterol levels.1 2 3 Genetic CETP deficiency is the most common cause of hyperalphalipoproteinemia (HALP) in the Japanese.4 5 6 7 8 9 10 It has been demonstrated that a G-to-A substitution at the 5' splice donor site of intron 14 (Int14 +1 G->A) and a missense mutation of exon 15 (D442G) in the CETP gene are common mutations associated with HALP. These 2 mutations are relatively frequent in the Japanese population.5 7 8 10 Patients with CETP deficiency have moderate hypercholesterolemia and markedly increased levels of HDL cholesterol. The lipoprotein abnormalities in CETP deficiency are also characterized by the presence of polydisperse LDL enriched with triglycerides and large, CE-rich HDL particles.11 12 13 14 These results indicated that CETP is involved in the regulation of plasma lipoproteins by modulating both the quantity and quality of each lipoprotein particle.

In addition, CETP plays an important role in reverse cholesterol transport from peripheral tissues to the liver.15 16 Recently, CETP deficiency has been thought to be a proatherogenic state because of the crucial role of CETP in reverse cholesterol transport despite high HDL cholesterol levels. The study of the Omagari area in Japan, where the Int14 +1 G->A mutation is extremely frequent, indicated that a marked HALP caused by CETP gene mutation may not represent a longevity syndrome.17 The Honolulu Heart Program demonstrated that the prevalence of coronary heart disease in men with CETP gene mutation was increased.18 Therefore, genetic CETP deficiency appears to be an independent risk factor for coronary heart disease. In the present study, we screened CETP gene mutations in 196 marked HALP subjects and identified a novel one in the promoter region of the CETP gene. Furthermore, we investigated the effects of this novel mutation on lipoprotein metabolism and its prevalence in the Japanese HALP subjects.


*    Methods
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*Methods
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Study Subjects
Four hundred sixty-six unrelated Japanese subjects (163 men and 303 women) with HALP (HDL cholesterol >=2.07 mmol/L=80 mg/dL) were referred to the lipid clinic in Osaka University Hospital and Nakajima Clinic in Omagari City, Akita Prefecture. Among these subjects, 196 had a marked HALP (HDL cholesterol >=2.59 mmol/L=100 mg/dL). Subjects with primary biliary cirrhosis, nephrotic syndrome, and thyroid dysfunction and massive alcohol drinkers (>=80 g/d) were excluded from this study. Ninety healthy normolipidemic subjects (53 men and 37 women) were examined as control subjects.

Lipoprotein Preparation
LDL (1.006<d<1.063 g/mL) was isolated from human plasma by sequential ultracentrifugation in a Beckman Ti 50.2 rotor with solid KBr to adjust the density at 1.063 g/dL.19 LDL was extensively dialyzed against PBS (pH 7.4) containing 1 mmol/L EDTA and 0.02% NaN3 and stored at 4°C.

Measurement of CETP Activity
The plasma CETP activity was determined according to the method described by Kato et al,20 with minor modifications. In brief, 80 µL of diluted (1:40) plasma sample was added to 70 µL of reaction mixture containing LDL (65 µg protein) and reconstituted HDL consisting of 36 µg apoA-I and 0.94 nmol [1-14C]cholesteryl oleate and incubated at 37°C for 30 minutes. LDL was then precipitated with 30 µL of 0.05% dextran sulfate and 30 mmol/L MgCl2, and the radioactivity in the precipitates was measured by a scintillation counter (Beckman LS5000TD). CETP activity was expressed as the percentage of pooled normal plasma compared with control levels, in which CETP activity was 360±69 nmol · h-1 · mL-1. The intra-assay and interassay (n=8) coefficients of variation were 2.7% and 6.0%, respectively.

Measurement of CETP Mass
The plasma CETP mass was measured by a sandwich ELISA using 2 monoclonal antibodies (mAbs) specific to human CETP, JHC1 and JHC2, as described.21 In brief, 100 µL of mAb JHC1 (20 µg/mL) in PBS was coated on a plate (Nunc Immunoplate II MaxiSorp) by incubation at 4°C overnight. The wells were then blocked with 200 µL of PBS containing 1% BSA (Sigma Chemical Co) for 2 hours at room temperature. After the plate had been washed with PBS containing 0.1% Tween 20, 100 µL of standard solution or diluted 1:400 plasma samples was added and incubated for 2 hours at room temperature. After washing, 100 µL of biotinylated mAb JHC2 (0.1 µg/mL) was added to each well and incubated for 1 hour at room temperature. After washing, 100 µL of horseradish peroxidase–conjugated streptavidin (1 µg/mL) (Vector Laboratories, Inc) was added and incubated for 30 minutes, followed by incubation with 100 µL of substrate solution containing 0.25 mg/mL o-phenylenediamine and 0.6% H2O2. After 30 minutes, the reaction was stopped by the addition of 100 µL of 2N H2SO4. Absorbance at 492 nm was measured by a plate reader (Labsystems). A pooled culture medium from Raji cells expressing recombinant human CETP was used as a secondary standard and purified human CETP as a primary standard. The assay range of the ELISA method was from 0.025 to 1.5 ng CETP/well. The assay was performed in duplicate for each sample. The intra-assay and interassay (n=8) coefficients of variation were 2.7% and 7.8%, respectively. No interfering effect on ELISA assay was observed with hemoglobin (10 g/L), bilirubin (0.2 g/L), or triacylglycerol (4.25 g/L). There was a strong positive correlation between plasma CETP mass and CETP activity (r=0.940, P<0.001).

Polymerase Chain Reaction
Genomic DNA was isolated from whole blood with a QIAamp Blood Kit (Qiagen). The promoter region and each exon of the CETP gene were individually amplified by polymerase chain reaction (PCR). In general, PCR was carried out on {approx}0.1 µg of genomic DNA in a buffer containing 10 mmol/L Tris (pH 8.3), 50 mmol/L KCl, 0.2 mmol/L each dNTP, 1.5 mmol/L MgCl2, 0.2 nmol/L of each primer, and 0.5 U Taq polymerase (Perkin-Elmer Cetus). PCR conditions were denaturation at 95°C for 5 minutes, followed by 35 cycles of denaturation at 95°C for 30 seconds, annealing at 56°C to 65°C for 30 seconds, and extension at 70°C for 1 minute, with final extension at 72°C for 10 minutes. The abundance and quality of DNA fragments were analyzed by electrophoresis on 3% agarose gels, followed by ethidium bromide staining and inspection under UV light.

Mutation Screening Using PCR–Restriction Fragment Length Polymorphism Analysis
The 6 known mutations were analyzed by PCR–restriction fragment length polymorphism (RFLP). The PCR amplification was performed with pairs of primers: 5'-CAGGGGCTCATTGTGGTGCT-3' (sense), 5'-GACCACAGGGAGTCAGCCAG-3' (antisense) for G181X22 ; 5'-GGACTTTACTCCACCCACC-3' (sense), 5'-GGATTGGGGTA-CGTGAGTAAAC-3' (antisense) for Q309X23 and Int10 +2 T->G24 ; 5'-CTTCTGTGCTCCAGGGAGGACTCA-3' (sense), 5'-CAGTTTC-CCCTCCAGCCCACACAT-3' (mismatch primer, antisense) for Int14 +1 G->A4 5 6 and Int14 +3 T ins7 ; and 5'-CAGCAAAGGCGTGA-GCCTGGTC-3' (mismatch primer, sense), 5'-CCCAGGAATCCT-GTCTGGGCC-3' (antisense) for D442G.9 10 The amplified PCR products were digested with the restriction enzymes MaeIII for G181X, DdeI for Q309X, MaeIII for Int10 +2 T->G, NdeI for Int14 +1 G->A, HpaI for Int14 +3 T ins, and SalI for D442G at 37°C for 3 hours. After digestion, the reaction mixture was electrophoresed on a 10% polyacrylamide gel. After staining with ethidium bromide, DNA fragments were visualized on a standard UV transilluminator. The novel -69 G->A mutation was also analyzed by PCR-RFLP. A substitution of G to A at nucleotide -69 in the promoter region of the CETP gene caused the disappearance of a restriction site for HapII. A 371-bp fragment was amplified with a pair of primers: 5'-AAAATGGTGCAGATG-GTGGAGGG-3' (sense) and 5'-GATGCTACTGATACTTA-CACAACCAG-3' (antisense). By digestion with HapII, PCR products yielded a fragment of 371 bp in the wild allele and fragments of 232 bp and 139 bp in the mutated allele.

Direct Sequencing of PCR Products
PCR products were purified with the QIAquick Gel Extraction Kit (Qiagen). Gel-purified products were sequenced by an ABI Prism 377 DNA sequencer (Applied Biosystems) using a BigDye Terminator Cycle Sequencing Kit (Perkin-Elmer Cetus).

Construction of the Promoter-Luciferase Fusion Plasmid
For evaluating the transcriptional activity in the promoter region of the CETP gene, we constructed a plasmid consisting of 164-bp and 570-bp promoter sequences of the CETP gene. Each promoter region was obtained by PCR using the primers 5'-CAGCACTTGGTCATCTG-GTCAC-3' (sense) and 5'-GTAAGTGGCTCGAGCCGTTCA-GCCTGGA-3' (antisense) for the 164-bp fragment and 5'-AGTTGGGGTACCCTTGTTGAATGTCTGGCTCTGAACTC-3' (sense) for the 570-bp fragment. The PCR products were digested with KpnI and XhoI and then ligated to PicaGene basic vector 2 (Wako Pure Chemicals Industries Ltd), constructing plasmids pCETP -570 (-69 G) luc or pCETP -570 (-69 A) luc and pCETP -164 (-69 G) luc or pCETP -164 (-69 A) luc, respectively.

Cell Culture and Transient Transfection Analysis
HepG2 cells were obtained from the American Type Culture Collection. Cells were cultured in Dulbecco’s MEM (Gibco BRL) supplemented with 10% FCS (JRH Bioscience), 100 U/mL penicillin, and 100 µg/mL streptomycin in 5% CO2 at 37°C. One day before the transfection procedure, HepG2 cells (2x105 cells/well) were plated onto 6-well plates (Iwaki Glass). After 24 hours of incubation, 1.0 µg of each plasmid was transfected into the cells by use of the Fugene 6 Transfect Reagent (Boehringer Mannheim) along with 0.5 µg of the pSV-ßgal plasmid (Promega) to calibrate the transfection efficiency. The cells were harvested 24 hours after transfection with 250 µL of lysis buffer LCB (Wako Pure Chemicals Industries Ltd). Luciferase and ß-galactosidase activities in the lysate were then determined with a Picagene Luminescence Kit (Wako Pure Chemicals Industries Ltd) and an Aurora GAL-XE kit (ICN), respectively, according to the manufacturer’s instruction. The luciferase activity was normalized with the ß-galactosidase activity for the transcriptional activities of the vector. The transfection experiment was carried out in triplicate and repeated 3 times for each experiment. Luciferase activity for the control vector was 0.37x106 relative luciferase units (RLU).

Analytical Methods
Total cholesterol, triglyceride, and HDL cholesterol in plasma were measured with an automated analyzer (Hitachi 7450) and commercial kits (Daiichi Pure Chemical Industries Co Ltd). LDL cholesterol concentration was calculated according to the equation of Friedewald et al.25 Plasma concentrations of apos A-I, A-II, B, C-II, C-III, and E were measured by the immunoturbidimetry method (Daiichi Pure Chemical Co Ltd).


*    Results
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*Results
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In the present study, we analyzed plasma CETP mass and activity in 196 unrelated Japanese subjects with a marked HALP (HDL cholesterol >=2.59 mmol/L=100 mg/dL), in which plasma levels of total cholesterol, HDL cholesterol, and triglyceride averaged 6.31±1.16 (mean±SD), 3.21±0.65, and 0.88±0.49 mmol/L, respectively (Table 1Down). Plasma CETP mass and activity in 196 marked HALP subjects were 1.6±1.1 µg/mL and 68±43%, respectively. Subsequently, the 6 known mutations in the CETP gene, G181X, Q309X, Int10 +2 T->G, Int14 +1 G->A, Int14 +3 T ins, and D442G, were screened by PCR-RFLP analysis. We detected 1 homozygote with G181X, 31 with Int14 +1 G->A, and 6 with D442G. There were also 1 heterozygote with G181X, 27 with Int14 +1 G->A, and 32 with D442G. Two compound heterozygotes with Int14 +1 G->A and G181X, and with Int14 +1 G->A and Int14 +3 T ins, and 15 with Int14 +1 G->A and D442G were also identified. No subjects with Q309X and Int10 +2 T->G were identified in this study. Among 196 marked HALP subjects, 118 subjects (60%) had >=1 of these known mutations (Figure 1Down).


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Table 1. Frequency of the -69 G->A Mutation of the CETP Gene in Japanese Subjects With HALP



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Figure 1. Screening of CETP gene mutations. The CETP mutations in 196 subjects with a marked HALP were analyzed by PCR-RFLP analysis, and 118 (60%) subjects had >=1 of the known CETP mutations. In 8 marked HALP subjects with no known CETP mutations and low CETP levels, the mutation of the CETP gene was analyzed by direct sequencing.

In 8 of 78 marked HALP subjects without known mutations, plasma CETP levels were <60% of controls (CETP mass <1.4 µg/mL), suggesting the presence of other unknown mutation(s) in the CETP gene (Figure 1Up). Subsequently, 17 exons and the promoter region of the CETP gene were analyzed by direct sequencing. Thus, a novel mutation has been identified in the promoter region of the CETP gene in a subject with low plasma CETP mass (0.9 µg/mL) and activity (43% of control levels). This mutation was a G-to-A nucleotide substitution at the -69 nucleotide in the promoter region (-69 G->A) (the number indicates the location from the transcription start point, +1) (Figure 2Down). The nucleotide substitution was revealed at the second nucleotide of the ETS binding site (CGGAA), which has been described as the PEA3 motif,26 located upstream of the putative TATA box. The proband was a 22-year-old woman, and her plasma total cholesterol and triglyceride levels were 5.53 and 0.66 mmol/L, respectively. Her HDL cholesterol concentration was moderately elevated (2.92 mmol/L).



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Figure 2. A, Partial DNA sequence in the promoter region of the CETP gene. The DNA sequencing revealed a heterozygous G-to-A substitution at the -69 nucleotide in the promoter region, which corresponds to the second nucleotide of the PEA3/ETS binding site (CGGAA) located just upstream of the putative TATA box. B, Nucleotide sequence of the promoter region (between -110 and -1) in the human CETP gene. There are nuclear hormone receptor (NHR) response element, 2 PEA3/ETS binding sites, and an Sp1 site upstream of the putative TATA box. The mutation we found is located at the second nucleotide of the PEA3/ETS binding site.

Furthermore, we screened the -69 G->A mutation with PCR-RFLP analysis in 466 unrelated HALP (HDL cholesterol >=2.07 mmol/L=80 mg/dL) subjects, including 196 marked HALP subjects, and found 6 subjects with this mutation (Table 1Up). Of 6 HALP subjects with this mutation, 1 was a compound heterozygote with -69 G->A and G181X and 2 with -69 G->A and D442G. The allelic frequencies of the -69 G->A mutation were calculated to be 0.0102 and 0.0037 in the marked HALP and HALP subjects, respectively (Table 1Up). The CETP mass level in 5 subjects with the novel mutation ranged from 0.4 to 1.6 µg/mL, suggesting that their plasma CETP levels were similar to those with the heterozygous Int14 +1 G->A mutation (Table 2Down). Furthermore, a compound heterozygote with -69 G->A and G181X had markedly elevated plasma HDL cholesterol (3.65 mmol/L) and significantly decreased CETP activity (13%), a lipid profile similar to that observed in subjects with a homozygous Int14 +1 G->A mutation (Table 2Down).


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Table 2. Lipid Profiles and Plasma CETP Levels in Subjects With -69 G->A Mutation

To know the mechanism by which the mutation causes a reduction of CETP mass and activities, we performed transfection experiments for the transcriptional activity at the PEA3/ETS binding site of the CETP gene. The major site of CETP mRNA expression is liver.27 It has been shown that isolated human hepatocytes express CETP mRNA and that the human hepatocyte–derived cell line HepG2 secretes CETP.28 29 Therefore, we performed transfection experiments for transcriptional activity using HepG2 cells. The 164-bp and 570-bp promoter regions of the CETP gene were cloned into luciferase reporter gene vector and transfected into HepG2 cells to measure transcriptional activities (Figure 3Down). The luciferase activity in the mutant, pCETP -164 (-69 A) luc or pCETP -570 (-69 A) luc, was markedly decreased compared with that in the wild-type sequence, pCETP -164 (-69 G) luc or pCETP -570 (-69 G) luc (11.32x106 versus 1.22x106 RLU, and 4.33x106 versus 0.38x106 RLU, respectively), indicating a markedly reduced transcriptional activity in the mutation of the PEA3/ETS binding site.



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Figure 3. Transcriptional activity in HepG2 cells transfected with CETP-promoter/reporter-gene constructs. HepG2 cells were transfected with luciferase-plasmids containing a promoter fragment of wild type and the same fragment containing a mutation at the -69 nucleotide, denoted as pCETP (-69 G) luc and pCETP (-69 A) luc, respectively. A reporter vector with 570 bp or 164 bp of the CETP promoter regions was generated. The luciferase activity was normalized with ß-galactosidase activity to establish the transcriptional activities of the vector. Values represent mean±SD of 3 separate experiments. The luciferase activity in the mutant, pCETP (-69 A) luc, was markedly decreased compared with that in the wild-type sequence, pCETP (-69 G) luc (*P<0.001 by unpaired t test).


*    Discussion
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up arrowAbstract
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up arrowMethods
up arrowResults
*Discussion
down arrowReferences
 
In the present study, we have identified a novel G-to-A mutation in subjects with a marked HALP, which was located in the promoter region of the CETP gene. This is the first mutation identified in the promoter region of the CETP gene. The novel mutation is a G-to-A substitution at the -69 nucleotide in the promoter region (-69 G->A), which is located in the consensus ETS binding site designated as the PEA3 motif.26 The allelic frequency of the -69 G->A mutation was lower than the other common mutations in the CETP gene; however, this mutation was identified in 6 unrelated subjects with HALP, whose lipid profiles and plasma CETP levels were similar to those with the known CETP deficiency. Furthermore, the luciferase promoter assay clearly demonstrated that the mutated promoter almost lost its activity in HepG2 cells. These results strongly suggested that the mutation in the PEA3/ETS binding site of the CETP gene would cause the reduction of CETP mass, leading to HALP.

To date, 22 ETS transcriptional factors have been identified in mammalians, which bind to the ETS binding site.30 All of these ETS transcriptional factors have DNA binding regions, so-called ETS domains. These transcriptional factors were classified into 9 groups based on the similarity of the ETS domain, ie, PEA3, ETS, ERG, ERF, ELG, ELK, ELF, YAN, and SPI. The ETS domain contains the structure of branched helix-loop-helix and binds to the ETS binding site: consensus sequence, 5'-(C/A)GGA(A/T)-3'. Although the PEA3/ETS binding site is believed to be quite important for promoter activity, spontaneous mutations at some PEA3/ETS binding site(s) appeared to be very rare. To our best knowledge, there was only 1 example that the PEA3/ETS binding site was mutated in the human disorder, reported by Nichols et al.31 They found a G-to-A mutation at the second nucleotide of the PEA3/ETS binding site located at the promoter region of the acetylcholine receptor E subunit gene in a white patient with congenital myasthenic syndrome. In the CETP gene, 2 putative PEA3/ETS binding sites have been identified within 100-bp promoter regions.26 32 The mutation found was located just upstream of the putative TATA box. The importance of the particular PEA3/ETS binding site may be supported by the site-directed mutagenesis study performed by Gaudet and Ginsburg.33 They extensively mutated the same PEA3/ETS binding site and examined transcriptional activity, showing that the mutated PEA3/ETS binding site (CGGAA->CGTAT) reduced the transcriptional activity to 40% of the wild type and lacked the specific binding of nuclear extracts in both HepG2 cells and Caco-2 cells. In the promoter region of the CETP gene, there are also several binding sites for transcriptional factors, such as the LXR element, retinoic acid receptor element, orphan nuclear hormone receptor response element, and Sp1 site.26 32 33 34 It would be interesting to know the functional interaction between the PEA3/ETS transcriptional factor(s) and other transcriptional factors in the promoter region of the CETP gene.

Although HALP was thought to be heterogeneous, the present study confirmed the previous reports that CETP deficiency contributed to 60% of HALP in Japan.24 We have shown that a marked HALP caused by CETP gene mutation is the impairment of reverse cholesterol transport. In addition, knockout mice of scavenger receptor class B type I with high levels of plasma HDL cholesterol caused accelerated atherosclerosis in the apoE-negative background.35 These data indicated that HALP is not always beneficial, but rather may be atherogenic. Therefore, elucidation of the molecular basis and pathophysiology in HALP other than CETP deficiency is the important issue for the future.


*    Acknowledgments
 
We thank Tomoichiro Oka and Mitsuaki Ishihara for useful discussion. The skillful technical assistance of Satomi Ishihara is gratefully acknowledged.

Received January 22, 2001; accepted March 8, 2001.


*    References
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up arrowAbstract
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up arrowMethods
up arrowResults
up arrowDiscussion
*References
 
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