Atherosclerosis and Lipoproteins |
From the Clinical Diabetes Unit, Division of Endocrinology and Diabetology, University Hospital, Geneva, Switzerland.
Correspondence to Richard W. James, Clinical Diabetes Unit, Division of Endocrinology and Diabetology, University Hospital, 1211 Geneva 14, Switzerland. E-mail Richard.James{at}hcuge.ch
| Abstract |
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Key Words: HDL atherosclerosis oxidative stress gene expression
| Introduction |
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There are substantial interindividual variations in serum PON concentrations that cannot be fully explained by known, coding region polymorphisms.2 9 We have recently demonstrated an association of serum concentrations with a polymorphism at amino acid 54 of the coding region.9 In complementary studies, we have observed differences in the levels of hepatic mRNA arising from the PON1 alleles defined by the L54M mutation.10 This implicates gene expression as a major source of variations in serum PON activities and concentrations.
The present study examined the hypothesis that polymorphisms are present in the promoter region of the human PON1 gene and are implicated in variations in serum PON levels. We report the identification of 3 polymorphisms, which have been characterized with respect to their influence on promoter activity. The physiological relevance of the polymorphisms was analyzed by studying their association with serum concentrations and activities of PON. Finally, their association with PON polymorphisms in the coding region of the gene has been determined.
| Methods |
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Screening for PON Promoter Polymorphisms
Analysis of Position T(-107)C
Hybridization with allele-specific
oligonucleotides was used to analyze
polymorphisms at the T(-107)C position (Figure 2
).
PCR-amplified fragments of the promoter region were loaded onto a nylon
membrane (Porablot NYamp, Macherey-Nagel) and hybridized either with
oligonucleotide IV (CCGCCCCACCCCTCCC), which is
specific for nucleotide T at -107, or with
oligonucleotide V (GGGAGGGGCGGGGCGG), which is specific
for nucleotide C at -107. With
oligonucleotide IV, hybridization was performed at
37°C, followed by 2 washes with 2x SSC/0.1% SDS at room
temperature. With oligonucleotide V, hybridization was
performed at 54°C, followed by 2 washes with 2x SSC/0.1% SDS at
room temperature and 1 high-stringency wash with 1x SSC/0.1% SDS at
60°C.
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Analysis of Position G(-824)A
Hybridization with allele-specific
oligonucleotides was also used to analyze the
polymorphism at position -824 (Figure 2
).
Allele-specific oligonucleotides were VI
(TGACTGCTATTCTTCAG), which is specific for nucleotide A at
-824, and VII (CTGAAGAACAGCAGTCA), which is specific for
nucleotide G at -824. Hybridization was performed at
44°C and was followed by 2 washes with 2x SSC/0.1% SDS at room
temperature and 2 washes with 0.1x SSC/0.1% SDS at room
temperature.
Analysis of Position G(-907)C
Allele-specific PCR was used to analyze this
position. The sense allele-specific primers were VIII
(CAGCAGACAGCAGAGAAGAGAC), which is specific for
nucleotide C at -907, and IX
(CAGCAGACAGCAGAGAAGAGAG), which is specific for
nucleotide G at -907. The opposing antisense primer was
primer I. PCR conditions were as described above, except that the
annealing temperature was 62°C. Taq polymerase and Q
solution from Qiagen were used in reactions.
For all oligonucleotides, hybridization was performed in ExpressHyb solution (Clontech) for 1.5 hours in the presence of 1 pmol/mL of 33P-labeled oligonucleotide.
Reporter Gene Vector, Cell Transfection, and Cell Culture
DNA fragments (1027 bp) from individuals who differed in
PON1 promoter structure were obtained by PCR amplification
with the use of primers I and III of the chromosomal DNA region
adjacent to the PON1 open reading frame. Fragments
were digested with MluI and BamHI (restriction
sites within the PCR primers) and inserted before the firefly
luciferase reporter gene in the pGL2Basic (Promega) derivative. Cloned
fragments were completely sequenced to ensure (1) the absence of any
nucleotide variations different from those described in the
present report and (2) that promoter sequences that were paired in
transfection studies (Figure 3
) differed only in the single
nucleotide position under study. Renilla
luciferase gene from plasmid pRLSV40 (Promega) was used as control for
transfection efficiency. The vectors were transfected into the hepatoma
cell line Hep G2 at 50% confluence by using 5 µg of DNA and 15 µL
of the transfection agent SuperFect (Qiagen). Transfected cells were
grown for 24 hours after transfection before being harvested for
analysis of firefly and Renilla luciferase
activities by use of the Dual Luciferase Reporter Assay kit
(Promega).
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The Hep G2 cell line was obtained from the European collection of cell cultures. The cells were grown in DMEM containing 10% fetal calf serum (GIBCO).
PON Activities and Mass Concentrations
PON enzymatic activities were assayed in human serum samples as
described previously11 by using both phenylacetate and
paraoxon as substrates. A control pool of human sera, independently
calibrated by Dr M. Mackness (University of Manchester, School of
Medicine, Manchester, UK), was used to standardize activity assays.
Mass measurements were performed by a competitive ELISA, as described
previously in detail.11
Genotyping of PON Coding Region Polymorphisms
DNA was extracted from blood cells, and the coding region
polymorphisms L54M and Q191R were determined by restriction
isotyping.9
Study Populations
The study population (n=374; 184 men and 190 women, mean age
47.9±0.72 years) consisted of volunteers from the medical research and
the University Hospital, Geneva, Switzerland. They were in good health
according to their answers to a short questionnaire and were not
undergoing any medical treatment or taking any medication for chronic
disease, notably cardiovascular disease and diabetes.
Participants gave a fasting blood sample. Mean serum lipid levels were
within clinically acceptable limits: cholesterol
5.50±1.0 mmol/L, triglycerides 1.18±0.61
mmol/L, and HDL cholesterol 1.23±0.32 mmol/L.
The study was approved by the ethics commission of the medical faculty,
University of Geneva.
Statistical Analyses
Continuous clinical and biological variables were
analyzed by 1-way ANOVA. Categorical variables were
compared between groups by the
2 test and
crude odds ratio. Allele frequencies were estimated by the
gene-counting method, and Hardy-Weinberg equilibrium was tested by the
2 test.
| Results |
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2=185.5, P<0.0001; for
-107x-824,
2=133.5, P<0.0001;
and for -824x-907,
2=97.8,
P<0.0001). A strong association was also observed between
the promoter polymorphisms and the polymorphism influencing
amino acid 54 of the PON1 gene coding region (for -107,
2=31.7, P<0.0001; for -824,
2=21.7, P<0.0005; and for -907,
2=39.9, P<0.0001) but not with
polymorphism 191.
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Promoter Polymorphisms Are Associated With Modulated Gene
Expression
The influence of the polymorphisms on gene expression was
examined by using reporter gene constructs. These indicated strong
independent impacts of 2 polymorphisms on transcriptional activity
of the PON1 promoter (Figure 3
). The -107C variant had
2 times
higher activity than did the -107T variant (P<0.05),
whereas the -824A polymorphism was
1.7 times more active than
the -824G polymorphism (Figure 3B
, P<0.05).
This is in agreement with the observed higher serum activities and
concentrations of PON associated with the -107C and -824A
polymorphisms (see below). No significant differences in gene
expression were noted when the -907C and -907G variants were
analyzed (Figure 3C
). Further studies are necessary to
determine whether there are interactions between promoter
polymorphisms with respect to gene expression and to define what
other factors, both genetic and nongenetic,10
influence serum concentrations of PON. A minimum conclusion from these
studies is that the promoter polymorphisms strongly influence gene
expression.
Promoter Polymorphisms Are Associated With Variations in Serum
PON Concentrations and Activities
Table 2
shows the PON concentrations
and activities (with the nondiscriminatory substrate phenylacetate) as
a function of the different polymorphisms. There were highly
significant variations in serum concentrations and activities of PON as
a function of all 3 promoter polymorphisms. Thus, -107T, -824G,
and -907C were associated with lower serum PON levels, whereas -107C,
-824A, and -907G were correlated with the highest concentrations and
activities. A gene dose effect is also evident, with heterozygotes
having intermediate values. Given the strong association between the
promoter polymorphisms and the data on reporter gene expression, it
remains to be determined to what extent each polymorphic site
contributes to variations in enzyme levels (see below).
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Table 3
shows the results of stepwise
multiple regression analysis of the different
parameters that could influence serum concentrations of
PON. Model A was limited to PON1 gene polymorphisms. It
shows that the T(-107)C polymorphism has a predominant effect,
accounting for 24.7% of the variation in serum concentrations of PON.
The G(-907)C polymorphism was also implicated but did not reach
statistical significance (P=0.07). Interestingly, the coding
region polymorphism affecting amino acid 54 also made a significant
contribution to variations in serum PON concentrations (4.4% of the
variation), whereas no significant contribution was observed for the
coding region Q191R polymorphism. The PON1 gene
polymorphisms accounted for 29.1% of the variations in serum PON
levels. Model B introduced other parameters, notably serum
lipids, into the analysis. They did not modulate the
associations of the T(-107)C and L54M mutations with serum PON, but in
this model, the association with the G(-907)C polymorphism was
also significant. In addition, HDL cholesterol,
triglycerides, sex, and age were independently associated
with variations in serum concentrations of PON. Model B accounted for
37.7% of the variation in serum PON levels.
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| Discussion |
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The T(-107)C polymorphic site appears to have a dominant effect on expression of the PON1 gene, with a minor contribution from the G(-907)C polymorphic site. We are presently examining the promoter sequence for possible transcription sites. The polymorphic position T(-107)C lies within the GGCGGG (the polymorphic site is italicized) consensus sequence of the binding site for the transcription factor Sp1.12 Mutations within this site have been previously shown to affect the promoter activity of other sites.13 14
In a previous study, we reported a significant association between the coding region L54M mutation and serum PON levels.9 The present study clarifies this point. It is, in part, due to the strong association with the promoter polymorphisms. However, this link does not explain completely the association of L54M with serum PON concentrations, which remained significant in the model containing the promoter polymorphisms. Thus, when we analyzed samples from subjects with the same T(-107)C genotype (eg, TT homozygotes), there remained a significant difference in PON concentrations between subjects who were homozygous LL (88.5±21.2 mg/mL, n=23) or MM (78.2±17.5 mg/mL, n=33; by ANOVA, P<0.05) for the L54M mutation. The observation is intriguing because the methionine-leucine difference at position 54 represents a conservative amino acid exchange. One possibility is that the latter could nevertheless affect either protein stability or the association of PON with HDL, the serum transport vector for the enzyme.
A second important implication of the present study relates to the association of the PON1 gene with the risk of vascular disease. Several studies have identified PON as an independent genetic risk factor for coronary disease,9 15 16 17 18 19 20 although there is no complete agreement on this point.21 22 These studies relate to the coding region polymorphisms L54M and Q191R. The ability of the promoter polymorphisms to modulate serum concentrations of the enzymes to an important degree suggests that they could influence the association between the coding region mutations of the PON1 gene and risk of disease. We are presently investigating this hypothesis. In this respect, it should be noted that polymorphisms affecting the Sp1 site have previously been shown to have particularly marked clinical consequences.23 24 A second possibility is that the promoter polymorphisms could be a confounding factor in the discordant results concerning the role of PON as a genetic risk factor. We are also studying this possibility.
Finally, it should be emphasized that observations involving PON also have implications in the toxicology field. Studies in animal models have clearly demonstrated that serum PON activity is protective against certain environmental poisons derived from organophosphates.2 25 26 In humans, the activity of the polymorphism arising from the Q191R coding region mutation undoubtedly has a major impact on susceptibility to these compounds. However, within subjects homozygous for Q191R alleles, there remains a considerable range of enzymatic activities,27 28 which will modulate susceptibility to poisoning. The present study indicates that in this case there is also a strong genetic influence.
| Acknowledgments |
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Received May 25, 1999; accepted June 25, 1999.
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B. Mackness, G. K. Davies, W. Turkie, E. Lee, D. H. Roberts, E. Hill, C. Roberts, P. N. Durrington, and M. I. Mackness Paraoxonase Status in Coronary Heart Disease: Are Activity and Concentration More Important Than Genotype? Arterioscler. Thromb. Vasc. Biol., September 1, 2001; 21(9): 1451 - 1457. [Abstract] [Full Text] [PDF] |
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I. Leviev, S. Deakin, and R. W. James Decreased stability of the M54 isoform of paraoxonase as a contributory factor to variations in human serum paraoxonase concentrations J. Lipid Res., April 1, 2001; 42(4): 528 - 535. [Abstract] [Full Text] |
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P. N. Durrington, B. Mackness, and M. I. Mackness Paraoxonase and Atherosclerosis Arterioscler. Thromb. Vasc. Biol., April 1, 2001; 21(4): 473 - 480. [Abstract] [Full Text] [PDF] |
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M. Senti, M. Tomas, J. Marrugat, R. Elosua, and f. t. REGICOR Investigators Paraoxonase1-192 Polymorphism Modulates the Nonfatal Myocardial Infarction Risk Associated With Decreased HDLs Arterioscler. Thromb. Vasc. Biol., March 1, 2001; 21(3): 415 - 420. [Abstract] [Full Text] [PDF] |
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