Vascular Biology |
From INSERM Unit 331, Faculty of Medicine Laënnec, Lyon, France.
Correspondence to Dr K. Zibara, INSERM U331, Laënnec Medical School, 8 rue G. Paradin, 69372 Lyon cedex 08, France. E-mail zibara{at}laennec.univ-lyon1.fr
| Abstract |
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Key Words: smooth muscle cell differential display virtual northern rat carotid hyperplasia cell culture translational elongation factor
| Introduction |
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Proliferation of SMCs in the intima of the vessel wall is thought to be either the result of an inflammatory process1 or that of a monoclonal growth.19 20 According to Ross,1 atherosclerotic lesions result from an excessive inflammatory fibroproliferative response to various forms of insult to the endothelium and SMCs of the artery. A large number of growth factors, cytokines, and vasoregulatory molecules participate in this process. After lesion formation, endothelial cells secrete chemotactic factors that would induce proliferation of SMCs and lipid deposition. LDLs that have been oxidized also participate in the formation of foam cells and atherosclerotic lesions. On the other hand, Benditt19 and Benditt et al20 hypothesized that a neoplastic process could arise during atherogenesis in response to a mutational or viral event.19,20 Indeed, certain genes have been shown to be implicated in the pathobiology of atherosclerosis and cancer.21 22 This hypothesis has been supported by experimental data demonstrating the appearance of SMCs in aortas of animals injected with carcinogens alone,23 in combination with methoxamine,24 or with oncogenic Marek's herpes virus.25 Moreover, DNA from human plaques was shown to completely transform transfected NIH 3T3 cells.26 Other factors, such as bacterial27 (Chlamydia pneumoniae) or viral28 agents (herpes virus and cytomegalovirus), have been detected and may be involved in the initiation and perpetuation of atherosclerotic lesions. In the present study, gene expression in normal rat synthetic SMCs at passage 9 (P9 cells) were compared with rapidly proliferating SMCs (V8 cell line) by differential display.29 A differentially expressed gene, present at high levels in rapidly proliferating cultured SMCs, was also shown to be upregulated in balloon catheterinjured, but not in normal, carotids.
| Methods |
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Cell Culture
Primary SMCs were obtained from explants of medial thoracic
aortas from 7- to 8-week-old male SpragueDawley (250 g) rat and
cultured as previously described.14 30 31 32 Cell samples
were preserved in liquid nitrogen at passages 2 to 10 and then every 10
passages. SMCs at passage 9 were shown to be in a synthetic state. A
spontaneously highly proliferating rat SMC line17 (V8) has
been used in this study. This cell line was established from aortic
media of adult rat and passaged >200 times.17 Both cell
types were grown in MEM medium supplemented with 10% newborn calf
serum. The growth rate of P200 passaged cells was shown to be higher
(x1.4) than that of P9 synthetic cells.17 To reach, at
the same time, a similar cell density and confluence, P9 and P200 cells
were seeded respectively at 14x103 and
10x103 cells/cm2 in
25-cm2 Falcon flasks. These cells, confluent within 5 to 7
days, were trypsinized and aliquots counted
(60x103 to 80x103
cells/cm2). Before RNA extraction, cultures were
growth-arrested by incubation in MEM medium supplemented with 0.1%
newborn calf serum for 24 hours.
Total and Poly(A)+ RNA Preparation
After cell culturing, cells were washed with Hanks' medium
(Sigma) and used for the RNA preparation. Total RNA was extracted by
using the guanidinium thiocyanate33 method. For
differential display analysis, genomic DNA contamination was
removed by DNase I (MessageClean, GenHunter). For cDNA library
construction and rapid amplification of 5' cDNA ends (5' RACE),
poly(A)+ RNA was isolated from total RNA using
oligo(dT)30 primers (Oligotex mRNA kit,
Qiagen).
Differential Display Analysis
Differential display was performed as previously
described29 (RNAimage, GenHunter).
Reverse Transcription (RT) Reaction
Total RNA (0.2 µg) from each sample was reverse transcribed
with 100 U of Moloney murine leukemia virus reverse transcriptase in
the presence of 250 µmol/L dNTPs and 2 µmol/L
H-T11 M (M can be either dA, dG, or dC, and H is the
HindIII restriction site). The 20-µL RT reaction was
reverse-transcribed for 1 hour at 37°C, then the enzyme was denatured
by heating at 75°C for 5 minutes.
PCR Amplification
Single-strand cDNA mixture (2 µL) thus obtained was used for 8
different PCR reactions, each containing a different arbitrary primer
from the 5' end. The 18-µL PCR mix included 2 µmol/L of the
H-T11 M primer (same as RT), 2 µmol/L of a specific arbitrary
primer, 25 µmol/L of dNTPs with 0.25 µL of
[
-33P]dATP (2000 Ci/mmol, Amersham),
and 1 U of Taq DNA polymerase (Perkin-Elmer). Thermal cycling
amplification parameters (40 cycles), using GeneAmp PCR
System 9600 (Perkin-Elmer), were as follows: 94°C (15 s), 40°C (2
minutes), 72°C (30 s), and a final 5-minute extension step at
72°C.
Separation by Electrophoresis
Only 3.5 µL of the PCR products was separated on a 6%
denaturing polyacrylamide gel in tris-borateEDTA
buffer after addition of 2 µL of loading dye (95% formamide,
10 mmol/L EDTA, pH 8.0, 0.09% xylene cyanole, and 0.09%
bromophenol blue). The gels were run for 4 hours at 1400 V, dried
without fixation for 2 hours at 80°C, exposed for 72 hours, and then
visualized by autoradiography.
Band Recovery, Cloning, and Sequencing
(1) Differentially expressed bands (upregulated or
downregulated) were recovered under sterile conditions by excising the
gel slice from the dried gel by using a razor blade. Each gel slice was
placed in 100 µL of sterile water, boiled for 15 minutes to
solubilize the DNA, and then ethanol-precipitated. (2)
PCR-reamplification is done with 4 µL of purified fragment, using the
same primer pair and PCR parameters that gave rise to the
band. (3) Reamplified DNA fragments were run on a 1.5% agarose gel.
Bands that succeeded to be reamplified were cloned into PCR II vector
(TA cloning kit, Invitrogen). (4) For DNA sequencing, minipreps of
plasmid DNA were performed,34 followed by the dideoxy
sequencing method35 (T7 Sequencing Kit, Pharmacia).
Homologies With the Data Banks
The sequences obtained were compared with known sequences by
searching in the different databases (eg, GenBank, EMBL, EST, and STS),
using the BLAST (basic local alignment search
tool)36 and FASTA37 programs.
Probes and Northern Blot
Total RNA was extracted as above, denatured, separated by
electrophoresis in formaldehydeMOPSagarose gel and then transferred
to a nylon membrane (Hybond, Amersham). After capillary blotting
performed overnight, the membrane was baked for 2 hours at 80°C.
Probes for northern blots were prepared following the random priming
method (High Prime), using the PCR-amplified inserts in the PCR II
vector described above, and then purified by using G-Sephadex (Quick
Spin Columns, Boehringer). Prehybridization and hybridization
were performed according to standard protocols.38 Blots
were exposed with intensifying screens against a Kodak film for 1 week
at -70°C. Similar loading of RNA was assessed by using the actin
probe.
Balloon Catheter Injury of the Rat Left Carotid Artery
Carotid arteries were obtained from 10- to 14-week-old male
SpragueDawley rats (350 g). Neointima formation was
induced as previously described.39 In brief, the left
carotid was exposed under an operating microscope (OPMI 7, Carl Zeiss).
After incision of the left external carotid artery, the balloon
catheter (2F Fogarty, Baxter) was introduced through the primitive
carotid artery. Injury of the left primitive carotid was produced by
passing the inflated balloon catheter back and forth into the carotid
for 3 times. The balloon was sufficiently inflated to generate slight
resistance and the catheter was then removed, to ligate the external
artery. Rats were kept under ad libitum conditions for 3 weeks after
balloon injury, after which they were anesthetized by urethane
(Sigma) for vessel extraction. Each carotid artery was cut into 2
pieces; the first was immediately snap-frozen in liquid nitrogen for
RNA extraction and the second was fixed, to be used for
histological and morphological controls. The right
carotid, considered the normal control artery, was also extracted. This
experimental model is known to induce a neointimal
hyperplasia similar to that observed in humans after angioplasty.
SMART Technique and Virtual Northern Blot
Because of limited amounts of total RNA, gene expression
analysis of rat carotids was performed by a tandem of SMART-PCR
(Clontech) and virtual northern, as opposed to a standard northern
blot. A full description of the SMART technology, and its applications,
is given in the Clontech manual. In brief, single-strand cDNA is
synthesized with 1 µg of total RNA from various samples (P9 and V8
cells, aorta, and right and treated left carotids). The RT is performed
for 1 hour at 42°C, using 200 U/µL of Superscript II transcriptase
(GibcoBRL), 10 µmol/L of the cDNA synthesis primer (CDS),
10 µmol/L of SMART oligo, 10 mmol/L dNTP, and 20
mmol/L DTT. When the 5' end of the mRNA is reached, the enzyme's
terminal transferase activity adds a few nucleotides,
primarily deoxycytidine, to the 3' end of the cDNA. RT then switches
templates and continues replicating to the end of the oligo at the 5'
mRNA end. The RT reaction was then heated at 72°C for 5 minutes. The
resulting full-length single-strand cDNA contains a sequence
complementary to the SMART oligo, which is then used as the template in
PCR to generate double-stranded cDNA. Choosing the optimal number of
PCR cycles ensures that the double-stranded cDNA will remain in the
exponential phase of amplification. In our experiments, the optimal
number of cycles was 16 because the plateau was reached after 17
cycles. Only single-strand cDNA having the SMART sequence at the 5' end
and the oligo(dT) at the 3' end are exponentially amplified by PCR. The
100-µL PCR reaction contains 10 mmol/L of dNTP, 10 µmol/L
of the PCR primer (complementary to the SMART oligo and CDS
primer), 2 µL of the 50x KlenTaq polymerase, and 10 µL of the 10x
KlenTaq PCR buffer. PCR conditions are as follows: 1 step at 95°C (1
minute), followed by 16 cycles of 95°C (15 s), 65°C (30 s), and
68°C (6 minutes). A virtual northern blot is obtained by first
running 0.5 µg of SMART-PCRamplified cDNA on an agarose/ethidium
bromide gel. Subsequently, the electrophoresed material is
transferred to a nylon membrane (Hybond N+,
Amersham), which is then probed with 32P-labeled
2A3-2 fragment, as in a standard northern blot. Actin is also used to
assess similar loading.
5' Rapid Amplification of cDNA Ends (5' RACE)
To obtain the upstream 5' region of the new gene, the 5' RACE
technique was performed basically by applying the touchdown PCR
principle40 and by using Marathon cDNA Amplification and
Advantage KlenTaq Polymerase kits (Clontech).
In the first step, single-strand cDNA is synthesized with 1 µg of V8
poly(A)+ RNA, using 10 µmol/L of the cDNA
synthesis primer and Moloney murine leukemia virus reverse
transcriptase for 1 hour at 42°C. DNA synthesis was verified
by the addition of dNTPs among which 1 was radiolabeled with
[
-32P]dCTP (1 µCi/µL, NEN).
The second step is the synthesis of double-stranded DNA performed at 16°C for 3 hours in an enzyme mixture containing Escherichia coli DNA polymerase I, RNase H, and E coli DNA ligase. These enzymes allow the synthesis of double-stranded cDNA, RNA degradation, and the formation of blunt ends, respectively. A 1% agarose gel electrophoresis is performed to estimate the quantity and quality of the double-stranded cDNA synthesized. The gel is then dried and put in contact with a Kodak film at -70°C to visualize the DNA smear.
The third step allows us to obtain a library of double-stranded cDNA, from V8 cells, by ligating an adapter to both ends of the double-stranded cDNA, using a T4 DNA ligase at 16°C overnight.
In the last step, an aliquot of the library is subjected to PCR. The 50-µL PCR reaction contains 10 µmol/L of dNTP, 10 µmol/L of the adapter primer (complementary to the cDNA adapter), 5 µL of the 50x KlenTaq polymerase, and 10 µmol/L of gene specific primer (GSP) complementary to the 3' differentially expressed fragment (2A3-2 GSP: 5'-GGGTAAAGTTATTAAATATACAATGTAATAAACG-3'). The mixture was subjected to a PCR step at 94°C (1 minute) followed by 33 cycles of 94°C (30 s), 60°C (30 s), and 68°C (2 minutes 15 s), and a 5-minute extension step at 72°C. The amplified DNA fragments were cloned into the PCR II vector and purified by using Qiagen Plasmid Midi Kit (Qiagen). The insert DNA is then sequenced commercially (Genome Express).
| Results |
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Tissue Distribution of 2A3-2 Gene
A rat multiple-tissue northern blot, probed by the 2A3-2 cDNA
band, showed the 1.2-kb gene to be present in skeletal muscle,
heart, aorta, lung, liver, kidney, and spleen tissues (Figure 2B
). Skeletal muscle contains not only the normal 1.2-kb mRNA,
but also a lower abundant transcript of ~2.4 kb. This transcript may
arise from the use of an alternative polyadenylation
site.41 The multiple northern blot shows that the 2A3-2
gene is not an artifact induced by cell culturing but is present in
different tissues.
SMART and Virtual Northern of Carotids
Neointimal hyperplasia of rat carotids, induced
by balloon catheter injury, was used to investigate the in vivo role of
this new gene in SMCs. Rat left carotids were treated by a balloon
catheter to initiate SMC proliferation and neointima
formation. In contrast, right untreated carotids were used as controls
(Figure 3
). Because the amount of total
RNA extracted from 1 carotid was <2 µg, we used a tandem of
SMART-PCR and virtual northern blot to assay expression levels of
2A3-2. This tandem approach of technologies gives information similar
to that obtained by a standard northern blot. The 2A3-2 gene was shown
to be upregulated (4-fold increase) in the left balloon-treated
carotid, in comparison with the control right carotid. The virtual
northern experiment was repeated and confirmed on 5 different blots.
Virtual northern blots further confirmed 2A3-2 upregulation in V8, but
not in P9, cells as previously observed by standard northern (Figure 4A
). It is noteworthy that the expression
of 2A3-2 in P9 cells, under quiescent (48 and 72 hours) or
proliferating conditions (0, 4, 8, and 24 hours), was not altered by
the state of the proliferation of the cells (Figure 4C
).
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5' RACE and Sequencing of the 2A3-2 Gene
The full length of this gene was obtained by 5' RACE, using a cDNA
library constructed from rapidly proliferating V8 cells. The molecular
weight of the 5' RACE product was 1.2 kb as previously
indicated by northern blot (Figure 5
).
The PCR product was amplified, purified, cloned, and sequenced
(Figure 6A
). The full 2A3-2
nucleotide sequence was then sent to the European Molecular
Biology Laboratory (EMBL) database, using Sequin software, to get an
accession number (AJ006151).
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Characteristics of the 2A3-2 Gene
The open reading frame of the sequenced gene (1149 bp) was
identified and shown to contain 972 bp running from the ATG start codon
to a TAG stop codon (Figure 6
). This gene had a very short 5'
untranslated region (7 bp long). The initiation codon (designated +1)
is preceded by a G residue at position -3 and followed by a T residue
at position +4. Analysis of numerous translational start sites
shows that the consensus sequence has a purine at position -3 and a G
residue at position +4.42 Finally, the cDNA contained 170
bp in the 3' untranslated region with a typical poly(A)
signal43 (AATAAA) that was determined 27 bp upstream of
the poly(A) tail. When the full-length nucleotide sequence
was analyzed by searching for homologies in the GenBank
database, using FASTA, it was observed to have a 72% homology with
human and bovine mitochondrial elongation factors,44
EF-Ts.
The presumed initiating ATG was assigned to the first methionine and
the predicted protein sequence of 324 amino acid residues was termed
the 2A3-2 protein (Figure 6B
). The deduced 2A3-2 protein
sequence showed a calculated molecular mass of 27 kDa. The
sequence was run against the Swiss Prot database, which
confirmed the GenBank results. The homologies with the bovine and human
EF-Ts were of 85% in the mature protein and of 70% in the overall
protein sequence. These important homologies suggest that we have
cloned the rat homologous EF-Ts gene. A comparison of our sequence with
human and bovine EF-Ts genes is shown in Figure 7
. It is noteworthy that the E
coli protein sequence has 29% homology with the bovine sequence.
NH2-terminal analysis of the
sequence indicates that the rat EF-Ts mature form begins with Ser-41 in
the long open reading frame (Figures 6B
and 7
). The
mitochondrial import signal is thus 40 amino acids long and it is 55
amino acids in the bovine form. The mitochondrial import signals are
usually not conserved between different species; however, they usually
lack acidic amino acids, are enriched in basic and hydroxylated
residues, and can form an amphiphilic
-helix or ß-sheet. The
transit peptide for rat EF-Ts lacks acidic residues and is moderately
rich in basic and hydroxylated residues (30%). To summarize, the
protein sequence is 324 amino acids (the human protein is 294 amino
acids and the bovine one is 338 amino acids), whereas the mature form
of the protein is 284 amino acids (283 amino acids for both the bovine
and the human homologs). The rat N-terminal part of the protein has 29
amino acids more than the human one.
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| Discussion |
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In performing differential display on synthetic and highly proliferating SMCs, a number of bands (51) were isolated. Such differentially expressed bands showed, on sequencing and database search, total, partial, or no homologies to known proteins (Zibara et al, unpublished data, 1998). The 2A3-2 cDNA band, after northern blot analysis, was selected for further study, as it was observed to be upregulated in a rapidly proliferating cell line (V8). This gene did not show, at the initial stage of the study, any significant homology to known genes. However, when the full-length nucleotide sequence was obtained, a 72% homology with the bovine and human mitochondrial EF-Ts is observed. Moreover, the protein is 85% homologous to bovine and human EF-Ts. Our hypothesis, concerning the role of 2A3-2 or EF-Ts, is that increased expression of this new gene by SMCs takes place after repeated arterial insult or injury and that it participates in vascular remodeling. 2A3-2 or EF-Ts expression is 4-fold higher in injured carotids compared with controls, 3 weeks after balloon injury. To further understand the role of EF-Ts, in the modulation of SMCs from a contractile to a synthetic phenotype, in situ hybridization must be performed on carotids left for different periods of time (7 to 40 days) after balloon injury. It is noteworthy that the expression of EF-Ts in synthetic cells (P9), under quiescent (48 and 72 hours) or proliferating conditions (0, 4, 8, and 24 hours), was not altered by the proliferation state of the cells. It appears therefore that the level of gene expression, between P9 and V8, is linked to the phenotypic state of the cells and not to their growth rate.
Modulation of SMC phenotypes is known to induce the
upregulation of several genes such as c-myc,45
c-myb,46 and c-fos,47 p65 subunit of
NF-
B,48 ras proteins,49
Osteopontin,50 mitogen-activated protein
kinases,51 angiotensin II,52 and
cdk2 kinase.53 Moreover, some new genes were recently
found to be upregulated in activated proliferating SMCs, such
as sgk54 (serum and glucocorticoid-regulated kinase), type
VIII collagen,55 nucleophosmin56 (a nuclear
phosphoprotein implicated in the regulation of cell growth and protein
synthesis), interferon-inducible protein-10,57 and
BART-158 (balloon angioplastyresponsive transcript in
rat carotid arteries). It is noteworthy that certain genes, such as the
type II transforming growth factor-ß receptor (RII), may play a
central role in atherosclerosis and cancerous tumor
cell proliferation21 22 and are common to both diseases.
It is conceivable that a certain common mechanism may be present in
both pathologies. Finally, a recent study by Nishio et
al59 showed that glucose induced, in bovine aortic SMCs, a
human elongation factor 2 homologous gene that is a member of the
GTPase family and that is essential for polypeptide synthesis. The
2A3-2 gene (EF-Ts), also identified in this study in SMCs, is essential
for protein synthesis. Indeed, EF-Ts is a translation factor implicated
in the elongation step and synthesis of all cellular proteins.
Furthermore, a member of the elongation factor family (EF-Tu), to which
EF-Ts belongs, facilitates the binding of aminoacyl-tRNA to the
ribosome during the elongation cycle of protein biosynthesis. The
elongation factor EF-Ts acts as a catalyst in the displacement of GDP
from the EF-Tu*GDP complex and allows the binding of GTP. This
reaction allows the ternary complex EF-Tu*GTP*aminoacyl-tRNA to
be formed. Carefully mapping the cascade of genes involved in SMC
migration and proliferation, in atherosclerosis and
restenosis, may ultimately allow a better understanding of the
SMC phenotype modulation.
Vascular SMC proliferation contributes to the pathogenesis of atherosclerosis. In addition, SMC proliferation is a key event in neointimal formation after balloon angioplasty and restenosis. The molecular signals that mediate these processes have not yet been identified. This study has identified a new gene, 2A3-2 or EF-Ts, not previously reported to be involved in SMC functions. Further work is needed to delineate the role of this new gene in vascular lesions.
| Acknowledgments |
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Received November 25, 1998; accepted December 3, 1998.
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