Thrombosis |
From the Atherosclerosis Research Unit (F.M.v.H., S.J.F.v.B., A.S., P.E., A.H.), King Gustaf V Research Institute, Department of Medicine, Karolinska Hospital, and the Division of Genetic Epidemiology (A.I.), Institute of Environmental Medicine, Karolinska Institute, Stockholm, Sweden.
Correspondence to Dr Ferdinand M. van t Hooft, King Gustaf V Research Institute, Karolinska Hospital, S-171 76 Stockholm, Sweden.
| Abstract |
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11% of the variation in plasma fibrinogen concentration.
It is concluded that the -455G/A and -854G/A polymorphisms of the
ß-fibrinogen gene are physiologically
relevant mutations with a significant impact on the plasma
fibrinogen concentration.
Key Words: DNA fibrinogen ß-fibrinogen gene -455G/A polymorphism -845G/A polymorphism
| Introduction |
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An elevated plasma fibrinogen concentration in an otherwise healthy individual could be due to the presence of predisposing environmental and/or genetic factors. There is general agreement that smoking is an important environmental factor associated with increased plasma fibrinogen levels.3 5 11 12 In addition, there is evidence that gender, age, body mass index, and plasma lipoprotein levels may affect the plasma fibrinogen concentration.13 However, there are conflicting reports regarding the role of specific genetic components in determining plasma fibrinogen levels. Some investigators14 15 16 have reported a substantial contribution of genetic effects on plasma fibrinogen levels, whereas others17 18 have reported only minimal genetic influences on plasma fibrinogen levels.
Human fibrinogen is composed of 3 pairs of nonidentical polypeptide
chains, denoted
, ß, and
, assembled in a bilaterally
symmetrical arrangement connected by disulfide bonds. The 3 chains of
fibrinogen are encoded by 3 independent genes grouped in a cluster of
50 kb on chromosome 4 at 4q23 to 32.19 It has been
demonstrated that synthesis of the ß-fibrinogen protein in
hepatocytes is the rate-limiting step in the overall
synthesis of the mature fibrinogen protein.20 Several
recent studies have therefore evaluated potential associations between
polymorphisms in the ß-fibrinogen gene and plasma fibrinogen
levels. At least 10 common polymorphisms have been
described.10 21 22 23 Several of these are associated with
increased plasma fibrinogen concentrations, suggesting that genetic
variation in the ß-fibrinogen gene can contribute to the regulation
of plasma fibrinogen levels. However, it was also observed that some of
these polymorphisms are in linkage
disequilibrium,23 24 which makes it difficult to determine
the physiological significance of the different
mutations.
In the study described here, we screened the proximal promoter of the
human ß-fibrinogen gene in search of common genetic variants with
distinct effects on the transcriptional activity of the gene. We
demonstrate that 2 nonrelated polymorphisms in the promoter of the
ß-fibrinogen gene (the G-to-A substitution at position -455 and the
G-to-A substitution at -854) have a substantial impact on the basal
rate of transcription of the gene encoding the ß-fibrinogen chain in
vitro. The rare alleles of both polymorphisms are associated
with a significantly increased plasma fibrinogen concentration in
middle-aged men. Overall, the 2 polymorphisms explained
11% of
the variation in plasma fibrinogen level. It is concluded that the
-455G/A and -854G/A polymorphisms are
physiologically relevant mutations with a
significant impact on the plasma fibrinogen concentration.
| Methods |
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Blood Sampling, Biochemical Methods, and DNA Procedures
Blood sampling, preparation of plasma, and quantification of
major fasting plasma lipoproteins were performed as described by Moor
et al.25 Plasma fibrinogen was measured as described by
Clauss26 using IL test fibrinogen C reagents supplied by
Instrumentation Laboratory Spa. The intra- and interassay coefficients
of variation for a control plasma sample with a fibrinogen
concentration of 2.64±0.06 g/L (mean±SD) were 1.8% and 2.2%,
respectively. For DNA procedures, nucleated cells from frozen whole
blood were prepared as described by to the method of Sambrook et
al,27 and DNA was extracted by a salting-out
method.28
Gene Sequencing
For nucleotide sequencing of the promoter of the
ß-fibrinogen gene, a 1109-bp section of the proximal promoter,
spanning positions -1074 to +35 (numbers refer to transcriptional
start site), was amplified by polymerase chain reaction (PCR) using the
forward primer 5'-TCCAAACCCTGATAACCTGC and reverse primer
5'-GAAGCTCCAAGAAACCATCC. This PCR fragment was used as a template for
additional amplifications as part of the Taq DyeDeoxy Terminator Cycle
sequencing system (Perkin Elmer). Nested primers, designed on the basis
of the published sequence of the promoter of the ß-fibrinogen
gene,19 were used for analysis of overlapping
sections of 200 to 300 bp in both directions.
Genotyping
Genotyping for the -148C/T, -249C/T, and -455G/A
polymorphisms was performed using PCR amplification with the
forward primer 5'-GAACATTTTACCTTATGTGAATTAAGG and reverse primer
5'-GAAGCTCCAAGAAACCATCC, followed by digestion with restriction enzymes
HindIII, Bsp1286I, and HaeIII,
respectively, and subsequent analysis on 2% agarose gels. The
genotyping procedure for the -854G/A mutation used the forward primer
5'-GGTGTTCCTATTGATTCTTGTAGG and reverse primer
5'-AATGAGGCCCATTTTCCTTGAATT. The reverse primer
contained 2 sequence mismatches (underlined), which made it possible to
evaluate the -854G/A mutation using the restriction enzyme
EcoRI. After digestion, PCR products were
analyzed using 2% MetaPhor agarose (FMC BioProducts).
DNA Constructs
Two sets of double-stranded oligonucleotides
were designed for the minimal promoter constructs, constituting the
30-bp sequence around the polymorphic region of either the -455G/A
or -854G/A mutation, flanked by BamHI and BglII
ends. The double-stranded oligonucleotides were ligated
head to tail into a BamHI-digested HCAT
vector.29 pCAT plasmids were constructed using
1104-bp promoter fragments, spanning -1069 to +35, ligated into a
pCAT basic vector as described by the supplier (Promega
Corporation). Promoter fragments were obtained by PCR amplification of
DNA samples from subjects homozygous for the various polymorphisms
using the forward primer 5'-AACTGCAGACCCTGATAACCT-GCCATC and reverse
primer 5'-GCTCTAGAGAAGCTCCAA-GAAACCATCC. The correct sequence and
orientation of the inserts were tested by DNA sequencing.
Electrophoretic Mobility Shift Assay
Nuclear extracts were prepared according to the method of
Alksnis et al.30 All buffers were freshly supplemented
with leupeptin (0.7 µg/mL), aprotinin (16.6 µg/mL), PMSF (0.2
mmol/L), and 2-mercaptoethanol (0.33 µL/mL). The protein
concentration in extracts was estimated by the method of Kalb and
Bernlohr.31 Oligonucleotides were designed
to represent the 30-bp sequences around the polymorphic
region. Pairs of oligonucleotides were annealed at
equimolar ratios. The double-stranded oligonucleotides
were end-labeled using the T4 polynucleotide kinase
method.27 Incubation for the electrophoretic mobility
shift assay (EMSA) was conducted as described by Dawson et
al,32 and the reaction products were applied to 7%
(wt/vol) polyacrylamide gel (80:1
acrylamide/N,N'-methylene-bisacrylamide
weight ratio), after which electrophoresis was performed in a solution
of 22.5 mmol/L Tris, 22.5 mmol/L boric acid, and 0.5
mmol/L EDTA buffer for 2.5 hours at 200 V. Nonradioactive competitor
DNAs, either identical, of the opposite allelic variant, or of
nonspecific origin, were added in 100-fold excess of the labeled
DNA.
The -455G/A and -854G/A polymorphisms were analyzed using 2 sets of oligonucleotides and 4 annealing reactions in more than 10 EMSAs.
Transient Transfection Assay
Human hepatoblastoma (HepG2) cells were cultured in 90-mm dishes
in DMEM supplemented with 10% FCS. Confluent cells were transfected
using the calcium-phosphate DNA coprecipitation method essentially as
described by Sambrook et al.27 The pSVß-galactosidase
gene (Promega) was cotransfected as an internal control. In all
experiments, 5 µg of CAT construct and 5 µg of ß-galactosidase
plasmid were added to the medium. CAT activity was analyzed as
described by the method of Sambrook et al27 and quantified
using a PhosphorImager (bioimaging analyzer BAS-2500, Fuji
Photo Film Co). ß-Galactosidase activity was determined according to
the suppliers instructions (Promega). CAT levels were expressed in
arbitrary units after standardization for ß-galactosidase activity.
All constructs were tested in triplicate in 4 independent transfection
experiments using 2 plasmid preparations.
Statistical Methods
Distribution of continuous variables in groups was expressed
as mean±SD or mean±SEM. Logarithmic transformation was performed on
all skewed variables to obtain a normal distribution before
statistical computations and significance testing were performed.
Allele frequencies were estimated by gene counting. A
2 test was used to compare the observed
numbers of each ß-fibrinogen genotype with those expected for
a population in Hardy-Weinberg equilibrium. The normalized linkage
disequilibrium coefficient (D') for the -455G/A and
-854G/A polymorphisms was calculated according to the method of
Ott.33 One-way ANCOVAs (with age or age and smoking
as covariates) and 2-way ANOVAs performed by the general linear model
procedure were performed to test whether genetic variation within the
ß-fibrinogen promoter was associated with differences in plasma
fibrinogen concentration. The Scheffe multiple comparisons test was
used as a post hoc test. The percentage of genotype-based
variation in plasma fibrinogen concentration was calculated according
to the method of Sing and Davignon.34 Differences in
transcriptional activity between promoter constructs were evaluated by
Students paired 2-tailed t test.
| Results |
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Allele-Specific Binding of 1 or More Nuclear Proteins to the
-455G/A and -854G/A Polymorphic Sites
We explored the possibility that the nucleotide
substitutions in the promoter of the ß-fibrinogen gene might affect
the interaction with nuclear proteins by using an EMSA. The binding
characteristics of 30-bp DNA fragments containing either the wild-type
or the mutant site for the 5 polymorphisms were evaluated using
nuclear extracts derived from HepG2 cells. No differences were observed
between the binding characteristics of the wild-type and the mutant DNA
fragments of the -148C/T, -249C/T, and -993C/T polymorphisms
(data not shown). In contrast, distinct differences between the binding
patterns of the wild-type and mutant DNA fragments were observed for
the -455G/A and -854G/A polymorphisms.
As indicated by the arrows in Figure 1
, 1
major and 1 minor protein-DNA complex were found to be associated with
the -455G allele. The major protein-DNA complex (Figure 1
, arrow 2) was not detected when the -455A allele was
analyzed. In contrast, substantial quantities of protein-DNA
complex 1 (Figure 1
, arrow 1) were observed in association with
the -455A allele. There was a distinct difference in size between
protein-DNA complexes 1 and 2, as can be seen more clearly in Figure 2
(compare lanes 2 to 5 and 6).
Competition studies showed that a 100-fold excess of unlabeled -455G
fragment substantially reduced the interaction of the labeled -455G
fragment with the nuclear proteins (Figure 2
, lane 3). In
contrast, no clear reductions were observed for the major protein-DNA
complex when a 100-fold excess of unlabeled -455A fragment (Figure 2
, lane 4) or unrelated DNA fragment (Figure 2
, lane 5)
was added as competitor for the binding of labeled -455G fragment to
the nuclear proteins.
|
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Three protein-DNA complexes were found to be associated with the
-854G-allele (Figure 3A
and 3B
,
complexes 1 to 3). However, only 1 of the protein-DNA complexes was
observed in relation to the -854A allele (Figure 3A
and 3B
,
complex 2). A 100-fold excess of unlabeled -854G fragment effectively
reduced the interaction of the labeled -854G fragment with the nuclear
proteins (Figure 4
, lane 3). In contrast,
a 100-fold excess of unlabeled -854A resulted in a reduction in
protein-DNA complex 2 only, whereas no changes were observed in
protein-DNA complexes 1 and 3 (Figure 4
, lane 4).
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Similar results were observed with 2 sets of DNA fragments, generated from oligonucleotides purchased from different commercial suppliers and annealed in 4 reactions. Moreover, comparable results were obtained when the binding characteristics of the 3 nuclear extracts were analyzed. Together, the results of the EMSA studies indicate that the nucleotides at positions -455 and -854 of the promoter of the ß-fibrinogen gene are involved in the binding of several different nuclear proteins. The EMSA studies also provided strong evidence of distinct differences between the wild-type and mutant DNA fragments of both the -455G/A and -854G/A polymorphisms regarding the specific binding of 1 or more nuclear proteins.
Rare Alleles of the -455G/A and -854G/A Polymorphisms
Increase Transcription of the ß-Fibrinogen Gene
Transfection studies in HepG2 cells were conducted to explore
whether the -455G/A and -854G/A polymorphisms influence the rate
of transcription of the ß-fibrinogen gene. CAT activities were
compared between promoter constructs harboring a 30-bp fragment of the
ß-fibrinogen promoter containing either the wild-type or mutant sites
of the -455G/A and -854G/A polymorphisms upstream of a minimal
and heterologous promoter coupled to a CAT reporter gene. As shown in
Figure 5
, significantly higher CAT
activities were observed for the -455A construct than for the -455G
construct (150±11%, P<0.005). Moreover, as shown in
Figure 6
, significantly higher CAT
activities were also observed for the -854A construct than for the
-854G construct (151±26%, P<0.05).
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The rates of transcription of 1104-bp fragments of the proximal
promoter spanning from -1069 to +35 of the ß-fibrinogen gene
containing either the -249T site, the -854A site, or the haplotype
combination of the -148T/-455A/-993T sites were compared with a
fragment containing the wild-type promoter. As shown in Figure 7
, comparable CAT activities were
observed for the wild-type promoter and the promoter containing the
-249T site (94±17%). In contrast, both the plasmid containing the
-854A site (134±21%, P<0.05) and the plasmid containing
the -148T/-455A/-993T haplotype (163±30%, P<0.05) had
significantly higher CAT activities than the wild-type plasmid.
Together, the results from the transfection studies indicate that both
the G-to-A substitution at the -455 position and the G-to-A
substitution at position -854 of the ß-fibrinogen promoter increase
the rate of transcription of the ß-fibrinogen gene.
|
Allele Frequencies and Degree of Linkage
Disequilibrium
Genotyping for the -148C/T, -249C/T, -455G/A, and -854G/A
polymorphisms was performed in 210 healthy, population-based men
aged 35 to 50 years. All polymorphisms were found to be in
Hardy-Weinberg equilibrium. The frequencies of the rare -148T, -249T,
-455A, and -854A alleles were 21.4%, 20.2%, 21.4%, and 18.6%,
respectively. Complete allelic association was observed between the
-148C/T and -455G/A polymorphisms. In contrast, the -249C/T
polymorphism was in complete negative linkage disequilibrium with
the -148C/T and -455G/A polymorphisms. Also, the -854G/A
polymorphism was in complete negative linkage disequilibrium with
the -148C/T and -455G/A polymorphisms. The normalized linkage
disequilibrium coefficient (D') was 0.27
(P<0.001) for the 2 functional -455G/A and -854G/A
polymorphisms. In fact, the 2 polymorphisms were in complete
negative linkage disequilibrium in this population; eg, the rare -854A
allele was always present together with the common -455G
allele and vice versa.
Associations Between the -455G/A and -854G/A Polymorphisms
and Plasma Fibrinogen Concentration
The relationships between the -455G/A and -854G/A
polymorphisms and plasma fibrinogen concentration were determined
in the 210 healthy, population-based middle-aged men. As shown in Table 1
, the rare -455A and -854A alleles
were associated with significantly higher plasma fibrinogen levels than
the common -455G and -854G alleles. Furthermore, subjects who
were homozygous for the -455A or -854A allele had higher plasma
fibrinogen concentrations than subjects who were heterozygous for these
alleles. Smoking had a significant effect on plasma fibrinogen
level. Overall, smokers (n=75) and nonsmokers (n=135) had plasma
fibrinogen concentrations of 2.89±0.45 and 2.72±0.43 g/L (mean±SD,
P<0.001), respectively. No specific interactions between
smoking and either the -455G/A or -854G/A polymorphism were
observed (data not shown).
|
The influences of the -455G/A and -854G/A polymorphisms on the
plasma fibrinogen concentration were about equally strong, accounting
for 5.4% and 4.4% of the variation in plasma fibrinogen, respectively
(Table 1
), when the effects of age and smoking habits were
considered in the ANCOVA. To further determine the impact of genetic
variation on fibrinogen levels in plasma, genotypes for the 2
polymorphisms were defined and ranked in order of mean fibrinogen
values (Table 2
). The highest plasma
fibrinogen concentrations were encountered in subjects who were
homozygous for the -455G and -854A alleles. ANCOVA controlling
for the influence of age and smoking habits showed that the mean
differences in fibrinogen level between combined genotypes were
highly significant (Table 2
). The genetic variation associated
with the joint -455G/A and -854G/A polymorphism accounted for
11.3% of the variation in plasma fibrinogen concentration.
|
| Discussion |
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EMSA studies were conducted as an initial step in the evaluation of the physiological relevance of the 5 promoter polymorphisms. No differences in the binding patterns of the wild-type and mutant probes for the -148C/T, -249C/T, and -993C/T polymorphisms were observed, suggesting that these polymorphisms do not affect the rate of transcription of the ß-fibrinogen gene. In contrast, significant changes were found in the complex binding patterns of the wild-type and mutant probes for both the -455G/A and -854G/A polymorphisms. These allele-specific differences were consistently observed using different probes and different nuclear extracts from HepG2 cells. Moreover, competition studies provided evidence that the changes in binding patterns are related to the specific interaction of several protein-DNA complexes. Together, the results from the EMSA studies suggest that both the -455G/A and -854G/A polymorphisms influence the specific binding of several nuclear proteins. Of note, during completion of this study, Brown and Fuller36 reported, in accordance with the results obtained in this study, the detection of a complex preferentially binding to the -455G allele.
The physiological roles of -455G/A and -854G/A polymorphisms were subsequently analyzed in transfection assays. These studies demonstrated that the basal rates of transcription in HepG2 cells for minimal promoter constructs containing either of the rare -455A or -854A sites were higher than the transcriptional activity of constructs containing the wild-type -455G and -854G sites, respectively. Essentially similar results were obtained with CAT constructs containing a 1104-bp section of the proximal promoter of the ß-fibrinogen gene. These results indicate that the rare alleles of the -455G/A and -854G/A polymorphisms are both associated with an increase in the basal rate of transcription of the ß-fibrinogen gene. The nature of the nuclear proteins involved in these protein-DNA complexes and the detailed molecular mechanisms remain to be defined. The present data suggest that the nuclear protein contained in complex 1 that binds preferentially to the -455A allele is either a stronger transcriptional activator than the nuclear protein contained in complex 2 or that complex 2 acts as a transcriptional repressor. For the -854 site, on the other hand, it appears that the nuclear proteins contained in complexes 1 and 3 are transcriptional repressors, interfering with the binding of the nuclear protein contained in complex 2, which acts as a transcriptional activator.
There is evidence13 that the plasma fibrinogen level is influenced by factors like sex, age, chronic disorders (eg, coronary heart disease, hypertension, and diabetes mellitus), and possibly racial background. Potential associations between the -455G/A and -854G/A polymorphisms and plasma fibrinogen concentrations were therefore evaluated in a well-defined group of apparently healthy, middle-aged men of Swedish origin. In this population, the -455G/A and -854G/A polymorphisms were independently associated with plasma fibrinogen concentration and explained 11.3% of the variation in plasma fibrinogen levels.
A significant relationship between the -455G/A polymorphism and
plasma fibrinogen levels has been documented in several
reports.13 21 23 37 38 39 40 41 42 It appears from these studies that
the overall impact of the -455G/A polymorphism on the plasma
fibrinogen concentration is rather small. For instance, investigators
from the Copenhagen City Heart Study13 reported that the
-455G/A polymorphism explained only 1% of the variation in plasma
fibrinogen level. The relationship between the -854G/A
polymorphism and plasma fibrinogen level, on the other hand, has
thus far been evaluated in only 1 study.23 It was reported
that the effect of the -854G/A polymorphism was insignificant in
univariate analysis but became significant after
adjustment for the -455G/A polymorphism. Previous reports thus
suggest that the impact of the -455G/A and -854G/A polymorphisms
on the plasma fibrinogen concentration is limited. However, in our
study, we found a significant contribution of both the -455G/A and
-854G/A polymorphisms to the plasma fibrinogen concentration.
Moreover, the 2 polymorphisms together explained
11% of the
plasma fibrinogen concentration. This indicates that the impact of the
-455G/A and -854G/A polymorphisms on the plasma fibrinogen
concentration may be larger than previously reported. It is likely that
discrepancies between studies are in part due to differences in
selection criteria of the populations analyzed. However, it is
noteworthy that in the only study in which the 2 polymorphisms were
compared directly,23 it was found that the -455G/A and
-854G/A polymorphisms were incompletely dissociated and not in
complete allelic dissociation as was observed in this study. This
points to subtle genetic differences between Swedish subjects and other
European populations, although inaccuracies in genotyping may also have
contributed to this phenomenon.
It seems reasonable to assume that the observations described above regarding the -455G/A and -854G/A polymorphisms are interrelated and part of a sequence of events starting at the level of the ß-fibrinogen gene and ultimately leading to increased plasma fibrinogen concentration. We thus propose that the 2 mutations affect the binding of hepatic nuclear factors to the promoter of the ß-fibrinogen gene, resulting in an increase in ß-fibrinogen transcription and enhanced secretion of mature fibrinogen by the liver, ultimately leading to increased plasma fibrinogen levels. However, it must be stressed that we cannot formally exclude the possibility that other mutations, linked to either the -455G/A or -854G/A polymorphism, may influence the metabolism of fibrinogen.
| Acknowledgments |
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Received December 24, 1998; accepted April 20, 1999.
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