Atherosclerosis and Lipoproteins |
| Abstract |
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G),
indicative of the shared additive effects of genes on pairs of traits,
were estimated between all 3 trait pairs: for LDL size and TG
G=-0.87, for LDL size and HDL-C
G=0.65, and for HDL-C and TG
G=-0.54. A similar pattern of
significant environmental correlations between the 3 trait pairs was
also observed. These results suggest that a large proportion of the
well-documented correlations in LDL size, TG, and HDL-C are likely
attributable to the influence of the same gene(s) in these families.
That is, the gene(s) that may contribute to decreases in LDL size also
contribute significantly to higher plasma levels of TG and lower plasma
levels of HDL-C. These relationships may be useful in identifying genes
responsible for the associations between these phenotypes and
susceptibility to cardiovascular disease in these
families.
Key Words: pleiotropy LDL size HDL cholesterol triglycerides families
| Introduction |
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Each of these cardiovascular risk factors also appears to be genetically influenced. For example, two of the most common forms of familial hyperlipidemia among families with documented coronary heart disease (CHD) have been classified as familial combined hyperlipidemia (FCHL) and familial "monogenic" hypertriglyceridemia (FHTG),8 9 10 11 both of which are characterized by variable and obligatory hypertriglyceridemia, respectively. Although the specific genetic bases of both FCHL and FHTG are poorly understood, studies indicate major gene effects on TG and apo B in FCHL families.12 13 In addition, there is also considerable evidence for genetic influences on LDL subclass phenotypes12 14 15 16 17 18 and HDL-C.19 20 21 22
Statistical and physiological relationships between measures of LDL size, plasma TG, and HDL-C are well established3 23 24 25 and may represent a high-CHD-risk lipid/lipoprotein phenotype with common underlying genetic influences. Sprecher et al26 27 first proposed that the combination of high TG and low HDL-C constituted an inherited "conjoint trait" associated with increased risk of CHD in families of hypertriglyceridemic or hypercholesterolemic probands participating in the Lipid Research Clinics Family Study. An atherogenic lipoprotein phenotype characterized by small dense LDL, low plasma levels of HDL-C, high plasma TG levels, and elevated apo B levels was previously described by Austin et al.28 Furthermore, a multivariate lipid factor characterized primarily by LDL size, plasma TG, and HDL-C25 has been identified and was shown to prospectively predict CVD.29 By comparing female monozygotic and dizygotic twins, this lipid factor was shown to be heritable and possibly linked to both the lipoprotein lipase gene and the hormone-sensitive lipase gene.30 31 Although the evidence supports common genetic influences on these cardiovascular risk factors, no study to date has simultaneously evaluated the genetic relationships among the 3 risk factors; LDL size, plasma TG, and HDL-C in high-risk families.
Thus, the purpose of this investigation was to evaluate the evidence for shared genetic influences between phenotypic variation in LDL size, plasma levels of TG, and HDL-C in families at increased risk for CVD32 by using quantitative genetic analysis.
| Methods |
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As part of the GET Study, living individuals from a total of 85 families were recontacted between 1994 and 1997. Of the 85 families, 58 (68.2%) had been classified as FCHL and 27 (31.8%) as FHTG at baseline. In the 20 years since the baseline studies were initiated, many family members had died, including those with the highest TG levels,32 and could not be resampled. New blood samples were obtained from surviving family members, including probands and their spouses; siblings and spouses of siblings; and grandchildren, nieces, and nephews of the proband. For the current analysis, eligible family members were those who were over age 18 at follow-up, who were not pregnant, and who were not too ill to participate. Each eligible family member was asked to complete and return a self-administered medical history questionnaire by mail and to provide a fasting blood sample for lipid and lipoprotein determinations. Approximately 49% of participants lived in Washington state, with the remaining 51% residing in 28 other states. All information was kept confidential and was not shared with other family members. Each participant provided written, informed consent at the time they were enrolled in the follow-up study, and all methods used to contact family members were approved by the University of Washington Internal Review Board.
Laboratory Measurements
All subjects were instructed to fast overnight. Blood samples
were centrifuged at 2500 rpm for 15 minutes using a
standardized protocol. For participants living >100 miles from the
Seattle area, plasma was separated and shipped on ice for overnight
delivery to the University of Washington.
Lipid determinations including plasma TGs and total HDL-C were performed at the Core Laboratory, Northwest Lipid Research Laboratories in Seattle, a Centers for Disease Control and Preventioncertified lipid laboratory. HDL-C and plasma TG were measured by enzymatic techniques (Abbott Laboratories) according to the standardized procedures of the Lipid Research Clinics protocol.34
Nondenaturing gradient gel electrophoresis was performed on isolated LDL using 2% to 14% polyacrylamide gradient gels, as previously described.23 35 36 The estimated diameters of LDL subclasses were calculated on the basis of a calibration curve constructed from high-molecular-weight standards run on the same gel.35 The size of the major LDL subclass, denoted LDL peak particle diameter (LDL size), was identified from the isolated LDL gel and used as a continuous variable in the quantitative genetic analysis as a measure of LDL size heterogeneity.
Statistical Analysis
Because TG and HDL-C distributions were positively skewed (2.16
and 0.96, respectively), the natural log transformations (ln) of these
risk factors were used for all analyses. Transformation reduced
the skewness in plasma TG and HDL-C to 0.12 and -0.01, respectively.
Untransformed values are presented in descriptive tables and
figures for ease of interpretation.
For the quantitative genetic analysis, pedigree and phenotypic data were prepared using the computer package PEDSYS.37 Statistical genetic analysis was conducted using the modified version of the Pedigree Analysis Package, version 3.0,38 which is based on established genetic theory of partitioning the total phenotypic variance of a trait into genetic and environmental components. In this approach, the univariate heritability (h2) of an individual trait represents the proportion of the total phenotypic variance due to additive genetic effects.39 The residual heritability is used here to reflect the proportion of variance attributable to additive genetic effects after accounting for age and sex effects.
Extension of univariate quantitative genetic
analysis to the multivariate state has been
described in detail.38 40 41 42 43 In this approach, the total
phenotypic correlation between pairs of traits is partitioned into the
additive genetic (
G) and random
environmental (
E) components by using
maximum-likelihood methods implemented in the modified version of the
Pedigree Analysis Package.38 The 3 pairs of
traits used in this trivariate quantitative genetic analysis
were (1) LDL size and TG, (2) LDL size and HDL-C, and (3) TG and HDL-C.
The additive genetic and environmental correlations between these pairs
of traits were obtained from the genetic and environmental
variance-covariance matrices, estimated by modeling the joint
distributions of the traits as a function of their population means;
their covariates and regression coefficients; the additive genetic
values; random environmental deviations; and the degree of relationship
among the individuals in this sample.
The genetic and environmental correlations represent the
additive effects of shared genes (pleiotropy) and of shared, unmeasured
environmental (nongenetic) factors on the phenotypic covariance
for each pair of traits, respectively. An estimate of the total
phenotypic correlation (
P) between 2
traits was obtained using the following equation:
P=[

G]+[

E],1
where h12 and
h22 represent
the residual heritability of each trait in the pair.
The significance of each of the estimated parameters
(eg, h2,
G, and
E)
was evaluated by likelihood-ratio tests by comparing the ln likelihood
of a model in which the parameter is estimated to the ln
likelihood of a more restricted model in which the same
parameter is set to zero. The likelihood-ratio test yields
a statistic that is asymptotically distributed approximately as a
2 with degrees of freedom equal to the
difference in the number of estimated parameters and is
calculated as -2(ln likelihoodrestricted
model-ln likelihoodgeneral model).
Polygenic pleiotropy is indicated by a
G
value that is significantly different from zero. An additional
likelihood-ratio test was performed for each significant genetic
correlation to test for complete pleiotropy
(
G=1.0). In this test, the unrestricted
model, wherein
G is estimated, is
compared with a more restricted model wherein
G is fixed at either 1.0 or -1.0. When
G is significantly different from
¦1.0¦, pleiotropy is interpreted as
incomplete.22
Finally, to obtain an estimate of the shared additive effects of genes on each of the residual phenotypes in a pair, the squared additive genetic correlation for that pair is multiplied by the heritability estimate for each trait. Similarly, the proportion of residual phenotypic variance in an individual trait that is due to shared effects of unmeasured environmental factors is obtained by multiplying the squared environmental correlation by 1 minus the heritability estimate.
To better meet assumptions of normality, individuals with plasma TG >4.5 SDs above the mean (TG >905 mg/dL) were excluded from all analyses (n=5). Thus, this analysis focuses on 780 individuals in 85 families who provided a fasting blood sample and completed a medical history questionnaire, including 78 spouse pairs, 501 parent-offspring pairs, and 518 sibling pairs. Quantitative genetic analysis was first performed in the whole data set and then separately in the FCHL and FHTG families. However, because there were no substantial differences when the quantitative genetic analysis was run separately in FCHL and FHTG families, only results based on the combined sample are presented.
| Results |
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Figures 1 through 3![]()
![]()
present the
frequency distributions for all individual study subjects (n=780) for
unadjusted measures of LDL size, plasma TG, and HDL-C, respectively.
The mean LDL size was 265.7 Å (SD 9.13) in this sample (Figure 1
). Figure 1
also shows a suggestive bimodal distribution
of LDL size. The overall mean plasma TG level was 1.80±1.27
mmol/L (159.5 mg/dL [SD 113.16]; median 1.46 mmol/L [129
mg/dL]) and was highly skewed (Figure 2
). Mean HDL-C was 1.24±0.38 mmol/L
(47.8 mg/dL [SD 14.77]; median 1.16 mmol/L [45.0 mg/dL]) and
was also positively skewed (Figure 3
).
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The maximum-likelihood estimates of the mean effects and variance
components from the quantitative genetic analysis are
presented in Table 2
.
Likelihood-ratio tests indicate significant (P<0.001)
residual heritabilities for each of the traits. Approximately one third
of the residual variance in LDL size
(h2=0.34), slightly greater than one
third of the residual variance in plasma TG
(h2=0.41), and more than half of the
residual variance in HDL-C (h2=0.54)
were attributable to additive genetic effects. This table also includes
maximum-likelihood parameter estimates for significant
(P<0.001) covariate effects. Based on the coefficients for
sex (ß-sex), mean values for females were 268.06 Å, 0.054
mmol/L (4.78 mg/dL), and 0.102 mmol/L (3.94 mg/dL) compared with
262.98 Å, 0.056 mmol/L (4.98 mg/dL), and 0.095 mmol/L (3.67
mg/dL) in males for LDL size, ln TG, and ln HDL-C, respectively.
Significant age effects were also detected for each of the 3 traits.
Overall, age and sex together accounted for 1.3%, 7.6%, and 17.6% of
the total variance in LDL size, ln TG, and ln HDL-C, respectively.
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In the multivariate analysis, all genetic
correlations were significantly different from zero
(P<0.001) based on likelihood-ratio tests (Table 3
). The negative genetic correlation
(
G=-0.87) between LDL size and plasma
TG was the strongest, suggesting that genes in common contribute to
decreases in LDL size and increases in plasma TG. The positive genetic
correlation (
G=0.65) between LDL size
and HDL-C was modest and suggests that shared genes that increase LDL
size also increase HDL-C. The negative genetic correlation between
plasma TG and HDL-C (
G=-0.54) was also
significant. Based on likelihood-ratio tests, the hypothesis of
complete pleiotropy (
G=±1.0) was
rejected for all genetic correlations (P<0.001).
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When squared, the additive genetic correlation between 2 traits in a
pair provides an estimate of the additive genetic variance for each
trait in the pair that is due to effects of the same gene(s). The
squared additive genetic correlation between LDL size and plasma TG
(
G2) was 0.757. Thus,
almost 76% of the additive genetic variance in LDL size is shared with
TG. The squared additive genetic correlation between LDL size and HDL-C
(
G2) was 0.423,
suggesting that nearly 50% of the additive genetic variance in each of
these traits is due to shared genes. The squared additive genetic
correlation between plasma TG and HDL-C
(
G2) was 0.292,
suggesting that almost 30% of the additive genetic variance in each
trait is due to genes shared between the pair.
Unmeasured environmental correlations were also significant
(P<0.001) between all pairs of traits. Consistent
with the genetic correlations, the environmental correlations between
LDL size and plasma TG and between plasma TG and HDL-C were negative,
whereas the environmental correlation between LDL size and HDL-C was
positive (Table 3
). When squared, the environmental correlations
provide an estimate of the proportion of the random environmental
variance (ie, that proportion of the shared residual phenotypic
variance not attributable to additive genetic effects or covariates)
for each trait that is due to the effects of the same unmeasured
environmental factors. Phenotypic correlations were estimated by using
the equation described in Methods and are shown in Table 3
.
Estimates of the contributions of shared additive effects of genes and
of shared unmeasured environmental factors on each of the residual
phenotypes in a pair are shown in Figures 4A
through 4C. Figure 4A
presents the results for LDL size and TG, indicating that 26% of
the residual variance in LDL size was due to additive genetic effects
that are shared with plasma TG, while 19% of the residual variance was
attributable to unmeasured environmental effects shared with TG. For
plasma TG, 31% of the residual variance was attributable to additive
genetic effects shared with LDL size, and 17% was attributable to
shared unmeasured environmental factors. However, the sum of the 2
proportions was less than 1 for each trait, suggesting that other
nonshared factors contributed to the residual phenotypic variance in
each trait of the pair: 55% for LDL size and 52% for TG (Figure 4A
). Similar results were obtained for the other trait pairs;
however, the proportion of nonshared residual variance was greater for
traits in these pairs (Figures 4B
and 4C
).
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Figure 4B
indicates that 14% and 23% of the residual variance
in LDL size and HDL-C, respectively, were due to shared additive
genetic effects between the pair. Shared unmeasured environmental
effects accounted for 15% and 11% of the residual variance in LDL
size and HDL-C, respectively. Approximately 30% of the residual
variance of each trait in this pair was shared; however, the majority
of the residual variance was due to other nonshared factors, 71% and
66% for LDL size and HDL-C, respectively.
Similar results were observed for TG and HDL-C (Figure 4C
). For
both TG and HDL-C, 71% of the residual variance was attributable to
other nonshared factors. Shared factors accounted for slightly less
than 30% of the residual variance in each trait; additive genetic
effects accounted for 12% and 16% of the residual variance, and
shared unmeasured environmental factors accounted for 17% and 13% of
the residual variance in TG and HDL-C, respectively.
| Discussion |
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Environmental correlations between each pair of traits were also significant, although generally not as large as the corresponding genetic correlations. However, they still provide evidence of shared random environmental effects among this set of phenotypically related lipid and lipoprotein risk factors, indicating the existence of other important covariates that were not included in this analysis. At least 40% of the residual phenotypic variance in each of the 3 traits is attributable to nonshared effects that almost certainly include environmental factors and may even include some dominance genetic effects that were not modeled in this statistical genetic approach. Importantly, identification and addition of significant environmental factors to the genetic model would decrease the residual environmental contribution to the phenotypic variance and increase the relative importance of the genetic effects already detected.
Univariate residual heritability estimates for the lipids and lipoproteins in this sample of high-risk families are consistent with previous reports. For example, in a sample of Mexican-American families participating in the San Antonio Family Heart Study, Mahaney et al21 reported heritability estimates of 0.53 and 0.55 for ln TG and ln HDL-C, respectively, compared with estimates from the current study of 0.41 and 0.54, respectively. Estimates of heritability for LDL size, plasma TG, and HDL-C based on female twins are also consistent with the estimates presented here, h2=0.30,14 h2=0.50 to 0.65, and h2=0.73,44 respectively. Based on data from male twins, the heritability estimate for HDL-C was 0.36.45
The phenotypic correlations estimated in this study are also
consistent with the well-documented patterns between these
lipids and lipoproteins.23 24 25 For example, in a recent
report from the Physicians' Health Study, the correlation for each
possible pair of these variables was strong and highly
statistically significant (P<0.01): -0.71 for TG and LDL
size, -0.57 for TG and HDL-C, and 0.61 for LDL size and
HDL-C3 compared with
P=-0.66,
P=-0.53, and
P=0.54, respectively, reported here.
The results presented in this study are also consistent
with a previous quantitative genetic analysis of TG and HDL-C.
Based on data from Mexican-American families participating in the San
Antonio Family Heart Study, Mahaney et al21 showed that
shared genes contributed to the covariation of TG and HDL. The
magnitude of the genetic correlation between TG and HDL-C reported in
the current study of high-risk families is remarkably similar
(
G=-0.54 versus -0.53,
respectively).21 Heller et al46 also
found significant genetic correlations between serum lipids and
apolipoproteins, including TG and HDL-C, in elderly Swedish twins. The
results of the current study extend these previous reports by including
a measure of LDL size and demonstrate common genetic influences between
LDL size and both HDL-C and plasma TG.
The hypothesis of common genetic influences on pairs of lipids and lipoproteins was first suggested by Goldstein et al.10 Based on data from the original family study published in 1973, Goldstein et al suggested that the FCHL phenotype was due to variable expression of a single dominant gene and not segregation of 2 separate genes.10 The hypothesis of common underlying genetic influences is further supported by recent results from linkage studies of candidate genes involved in lipid and lipoprotein metabolism. Two recent reports, 1 based on families ascertained in Finland and the other based on a mouse model of FCHL, have strongly suggested the existence of a novel gene for FCHL on chromosome 1.47 48 In addition, Dallinga et al49 showed that DNA variations in the apo AI-CIII-AIV gene cluster modify plasma TGs, LDL-C, and apo CIII levels in families with FCHL. Recent sib-pair linkage analysis also provides evidence for common genetic influences on LDL size, TG, and HDL-C. Preliminary evidence for linkage between the apo B gene and a lipid factor identified by factor analysis and characterized by LDL size, plasma TG, and HDL-C is based on data from the Kaiser Women Twins Study.31 Furthermore, using data from the same women twins, Austin et al50 also provided evidence for linkage between the apo B gene and each of the following individual risk factors: LDL size, TG, HDL-C, and apo B levels. Several studies have also reported linkage between the apo B gene and individual measures of circulating lipids and lipoproteins, including measures of LDL heterogeneity51 and TG.52 Several other candidate genes, including the LDL receptor, lipoprotein lipase, and apo AI-CIII-AIV loci, have been shown to be associated with lipids and lipoproteins.53 54 55 Additionally, the lipoprotein lipase gene has recently been linked to LDL size, with simultaneous effects on TG and HDL-C in lipoprotein lipasedeficient families.56
Together these findings suggest that each of the 3 lipid and lipoprotein measures reflect a common underlying process that is controlled, at least in part, by shared genes and provide strong support for the existence of genes with pleiotropic effects influencing covariation in plasma lipids and lipoproteins. Thus, it may be appropriate to consider the aggregate effects of these risk factors in predicting CHD, as has been recently reported in type 2 diabetes.23 The use of multivariate traits is an important alternative to traditional approaches of estimating independent effects when the traits have a common etiologic pathway. This may be particularly true when considering genetically related risk factors.
Furthermore, from the standpoint of genetic mapping, large-magnitude genetic correlations observed in the current study, particularly those between LDL size and plasma TG, can be used to delimit major-locus hypotheses, including major-locus pleiotropy and linkage, that can then be tested by multivariate segregation analysis and combined segregation and linkage analysis.21 57 For example, using a multivariate lipid phenotype characterized by LDL size, plasma TG, and HDL-C may be advantageous when pleiotropy is due primarily to major loci.57 Evidence for linkage with the multivariate lipid phenotype could represent a gene that is common to all 3 related traits, suggesting pleiotropic effects beyond those described in the current article.
In addition, when pleiotropy is due primarily to shared additive effects of polygenes,57 such traits with high genetic and environmental correlations can also be used as covariates in univariate segregation and linkage analyses. Specifically, by removing common genetic effects of other traits, the likelihood of detecting genes influencing the unique residual component of an individual trait may be increased. For example, on the basis of the results presented in this study, both HDL-C and plasma TG could be included as covariates in analyses of LDL size to account for shared additive genetic and random environmental contributions to the variance in LDL size. Evidence for linkage with the residual trait would represent a gene unique to that trait. Importantly, the pleiotropic effects identified in this study can thus be used to effectively increase the likelihood of detecting quantitative trait loci.
Finally, although these results were interpreted as representing polygenic pleiotropy, individual loci exerting substantial effects on 1 of these 3 phenotypes may be responsible for some or all of the pleiotropy detected in this analysis. However, it is important to emphasize that the analyses presented here do not explicitly distinguish between the pleiotropic effects of single, major loci and the pleiotropic effects of multiple loci. Thus, shared additive effects of individual loci may well be included in the genetic correlations. Additionally, the effects of closely linked loci exhibiting strong linkage disequilibrium could also contribute to the genetic correlations and the well-documented pattern of phenotypic associations between these lipids and lipoproteins. Linkage and other statistical genetic studies are currently underway to test and distinguish between these hypotheses in this population.
Overall, these results suggest that correlations between LDL size, plasma TG, and HDL-C are strongly influenced by shared genes and thus may be jointly involved in genetic susceptibility to CVD. Localizing and identifying these gene(s) may lead to a better understanding of the role of LDL size, plasma TG, and HDL-C in susceptibility to CVD in these high-risk families.
| Acknowledgments |
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Received December 8, 1998; accepted March 23, 1999.
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