Original Contributions |
From the Departments of Chemical Pathology (Y.-T.M., C.-P.P., J.Z., Y.-S.C., T.W.L.M., J.R.L.M.) and Clinical Pharmacology (B.T.), The Chinese University of Hong Kong, Prince of Wales Hospital, Hong Kong, China.
Correspondence to Prof C.-P. Pang, Department of Chemical Pathology, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, NT, Hong Kong. E-mail cppang{at}cuhk.edu.hk
| Abstract |
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Key Words: Chinese familial hypercholesterolemia LDL receptor gene
| Introduction |
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FH has a prevalence of about 1 in 500 in most populations and is inherited in an autosomal-dominant mode. Homozygous FH occurs in about 1 in 1 million and usually leads to premature death due to coronary heart disease (CHD). Heterozygous FH is probably the most common monogenic disorder, with preventable consequences and effective treatments.3 The diagnosis of FH is based mainly on family history, plasma total and LDL cholesterol levels, the presence of tendon xanthomata and premature CHD, or similar findings in first-degree relatives.3 However, up to 15% of FH subjects, especially children, might be misdiagnosed using these criteria.4 An alternative diagnostic approach is cellular assay of the ability of lymphocytes or fibroblasts to bind or internalize LDL, which is technically tedious and not suitable for routine clinical use.5 Direct DNA analysis should provide an unequivocal result and allow appropriate early genotype-specific treatment as well as antenatal and family studies.6 Polymerase chain reaction (PCR) and single-strand conformation polymorphism (SSCP) are efficient and effective methods for detecting mutations in the LDL receptor gene.2 7 8
The prevalence of FH in whites and Asians is probably similar.9 Although the prevalence has not been documented in the Chinese, clinical experience has indicated that heterozygous FH is a common disorder leading to atherosclerosis and CHD.10 Studies in China suggest that patients with heterozygous FH may lack the usual clinical expression and thus may not be identified unless they are a relative of a homozygote.11 It was suggested this factor may be due to the traditional low-fat Chinese diet, resulting in low levels of LDL cholesterol, or to genetic influences such as a "cholesterol-lowering" gene. Our experience in Hong Kong, where the diet is higher in fat and population cholesterol levels are more similar to Western countries, suggests that heterozygous FH patients show similar clinical expression to those in the West or Japan.9 To date, only 12 mutations in the LDL receptor gene have been reported in the Chinese.11 Whether common mutations of diagnostic value exist in the LDL receptor gene in the Chinese is uncertain. Here we report our investigation of the promoter and 18 coding exons of the LDL receptor gene for mutations in Chinese FH patients.
| Methods |
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PCR
The promoter and 18 coding exons of the LDL receptor gene were
amplified by PCR using primers as described.2
Genomic DNA was extracted from EDTA whole blood samples by the
salting-out method.13 Each PCR mixture, 25 µL
in volume, contained 50 ng DNA, 100 µmol/L each dNTP, 15 pmol of
each primer, 2.0 mmol/L magnesium chloride, and 0.5 U
Taq DNA polymerase (GIBCO-BRL). The PCR was carried
out on a TC1 thermal cycler (Perkin Elmer-Cetus): 35 cycles of 95°C
for 45 seconds and 68°C for 6 minutes, final extension at 68°C for
15 minutes. For SSCP analysis, 0.1 µL of
[
32P]dCTP (Amersham) was added to the
reaction mixture prior to PCR.
SSCP
The32P-labeled PCR product (1 µL)
was mixed with 10 µL of loading dye (95% formamide, 10 mmol/L
EDTA, 0.1% bromophenol blue, and 0.1% xylene cyanol) and denatured at
95°C for 5 minutes. After snap-cooling in ice, 6 µL of each mixture
was electrophoresed in 6% polyacrylamide gel
(acrylamide:bisacrylamide=49:1) with or without
10% glycerol in 45 mmol/L borate buffer containing 1 mmol/L EDTA, pH
8.3 at 6 W at 4°C or 3 W at room temperature.
Reverse TranscriptionPCR
RNA was extracted by the acid guanidinium thiocyanate
method14 from leukocytes isolated from EDTA blood
using Ficoll Type 400 (Pharmacia). Total RNA (2 µg) in a 20-µL
reaction mixture containing 0.5 µg of oligo (dT), 50 mmol/L Tris
buffer (pH 8.3), 75 mmol/L potassium chloride, 10 mmol/L
dithiothreitol, 3 mmol/L magnesium chloride, 0.5 mmol/L dNTP,
and 200 IU of M-MLV-reverse transcriptase (GIBCO-BRL) was incubated at
37°C for 1 hour. For PCR, 2 µL of the RT product containing the
first strand cDNA was mixed with 0.1 mmol/L each dNTP, 15 pmol of
each primer, 2.0 mmol/L magnesium chloride, 0.5 U Taq
DNA polymerase; final volume 25 µL. The upstream primer was
5'-GAGGAAATGAGAAGAAGC-3' (nucleotides 2333 to 2350 of the
cDNA sequence) and the downstream primer 5'-GTTGTGGCAAATGTGGAC-3'
(nucleotides 2506 to 2523). The PCR program consisted
of 40 cycles of 95°C for 30 seconds, 58°C for 30 seconds,
and 72°C for 2 minutes, with final extension at 72°C for 5
minutes.
Direct DNA Sequencing
The PCR products were sequenced using a double-strand DNA
cycle sequencing kit (GIBCO-BRL) after ammonium acetate and isopropanol
precipitation. The primers for PCR were used after being end-labeled
with [
32P]dATP (Amersham). The same PCR
temperature program was used for the sequencing reaction, but the cycle
number was 30.
Haplotying of the LDL Receptor Gene
The haplotypes of the LDL receptor gene were analyzed
using 4 polymorphic sites: SfaNI in exon 2,
AvaII in exon 13, NcoI in exon 18, and TA repeats
in the 3'-untranslated region of exon 18.15 16
All polymorphic sites were confirmed by direct double-strand DNA
sequencing.
| Results |
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Apart from subject L322, who was a compound heterozygote of the
44C
T and P604L mutations, all subjects were heterozygous for the
mutations (Table 2
). L322 had coronary artery bypass graft
surgery at the age of 27. His plasma cholesterol level was
around 12 mmol/L despite treatment including plasmapheresis. The
P664L mutation was inherited from his father, but his mother does not
carry either mutation (Figure 1
).
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In proband L24 with the mutation V776M, the G
A substitution at
nucleotide 2389 occurs at the last base of exon 16, which
may be the -1 position of the 5'donor splice site. Its effect
on splicing was investigated by reverse transcriptionPCR. Only the
normal G allele was found. This mutation thus appears to cause a
donor site splicing error, the first of such a mutation reported for
the LDL receptor gene.
No mutation was detected in 9 patients in the promoter and all the
known coding regions of the LDL receptor gene. From these 9 probands,
there were 23 first-degree relatives available for testing. No
mutations were found for these regions of the LDL-receptor gene in the
relatives. Their ages ranged from 17 to 62 and their total
cholesterol levels from 3.8 to 12.9 mmol/L. The
hypercholesterolemia appeared to show bimodal
inheritance, as demonstrated in 2 of the family pedigrees shown in
Figure 2
.
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Familial defective apolipoprotein B was not found by DNA analysis of the R3500Q mutation in any study subjects.
In our SSCP analysis, the presence of glycerol in the electrophoresis gel was crucial. Without glycerol, no SSCP could be detected in any of the PCR products. With 10% glycerol, SSCP was obtained in 22 PCR products of 21 patients. Of these PCR products, 4 were obtained from electrophoresis at 4°C and 18 at room temperature. The 18 mutations were identified in these 22 PCR products, since some patients shared the same mutations and 1 patient, L322, has 2 mutations. A 100% sensitivity of our SSCP analysis, confirmed by sequencing all the PCR products of all study subjects, was obtained by electrophoresis in the presence of 10% glycerol at 2 different temperatures: room temperature and 4°C.
Among the 18 mutations detected in our FH patients, 11 were new
mutations first found in this study: D69N in exon 3, I101F and G170X in
exon 4, C308Y in exon 7, L393R and L405P in exon 9, D471N in exon 10,
17061G
T in intron 11, 1779delC in exon 12, A606V in exon 13, and
C656F in exon 14 (Table 2
). Three mutations, C308Y,17
L393R,17 and V408M,19 occurred
in more than 1 unrelated patient.
Among these 30 FH patients, 6 previously reported polymorphisms
were found (Table 3
). The genotypic
distributions were within Hardy-Weinberg equilibrium (data not
shown).
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| Discussion |
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6.8
mmol/L, whereas relatives without the mutations had total
cholesterol
6.8 mmol/L. Two probands, L28 and L293,
had only 1 first-degree relative available for testing and neither had
the mutation. Their total cholesterol levels were 4.7 and
5.9 mmol/L, respectively. Only the mutation L405P in subject L293
has not been previously described and could not be confirmed in a
relative. In 3 subjects, L66, L253, and L39, no relatives were
available to test. The mutation L393R in L66 was found in 2 other
unrelated probands in this study (Table 2
There are now 29 mutations from 34 mutant alleles identified in the
Chinese, including those from previous
studies.2 11 In the present study there are 3
recurrent mutations C308Y and V408M in 2 and L393R in 3 unrelated
patients (Table 2
). The incidence rate, however, is too low to
implicate common mutations due to a founder effect when compared with
other populations, such as the Japanese.9
Screening of a large number of clinically diagnosed FH patients is
necessary to affirm the prevalence and diagnostic value of
these mutations.19
The G
A substitution at nucleotide 682 causes the
mutation E207K. It was first described in a French Canadian population
with a frequency of 2%.20 This mutation occurs
at a CpG hot spot in which the G is mutable to A, C, or
T.2 Such mutations had been detected in different
ethnic groups and might have occurred independently during
evolution.
A novel mutation was detected in intron 11 at 1 base position after the
last base (position 1706) of exon 10. It was designated 17061 G
T.
Although it is probably a class 1 mutation,2 it
remains to affirm whether it really creates mRNA splicing errors.
The C
T substitution at nucleotide 2054 in exon 14,
resulting in the mutation P664L, was first reported in an
Indian21 and occurs in different ethnic groups
with frequencies ranging from 0.8% to 3.3% among FH
patients.9 22 23 This mutation affects the
intracellular processing of the LDL receptor protein and is possibly a
common mutation worldwide.
The 2 mutations at the CpG dinucleotide in exon 13, A606V and A606T, due to a C-to-T change at nucleotide 1880 and a G-to-A change at nucleotide 1879, respectively, are the only mutations identified in exon 13, and they have been observed only in the Chinese. In contrast, mutations in exons 9 to 12, which code for equivalent functional parts of the LDL receptor as does exon 13, are frequently detected in different populations.2 The A606T mutation has been found in a Chinese subject in mainland China having milder hypercholesterolemia than our subject,11 suggesting an environmental effect on phenotypic expression. However, such diversified phenotypic expressions of A606T could also be the result of a multigenic trait.
The allelic frequencies of the polymorphisms found in our FH
patients (Table 3
) were different from those of the whites and similar
to those of the Japanese.16 24 25 26
2 analysis showed that the
allelic frequency of the AvaII polymorphism at exon 13
(0.88/0.12) was significantly different
(
2=19.2, P<0.001) from that
reported for whites (0.51/0.49),15 but there was
no significant difference (
2=0.36, NS)
compared with Japanese subjects (0.80/0.20).24
Comparison analysis with the AciI,
HincII, and MspI polymorphisms in exons 11,
12, and 15, respectively, gave similar results. The number of subjects
(30) in our study might be slightly small for such statistical
calculation, but the difference was obvious and indicated an isolation
between white and Oriental populations. A large screening study is
required to test whether such isolation really exists.
The 9 patients in whom we did not detect any LDL-receptor mutation
constituted 30% of all our FH patients. This percentage was
consistent with a previous study on 10 Chinese FH patients and
higher than in another study on 20 Danish FH patients, in which the
corresponding percentages were 30% and 10%,
respectively.8 11 It is possible that mutations
were not in the known coding regions or the promoter of the LDL
receptor gene.27 Meanwhile, some patients may
have a defective apolipoprotein B, with mutations other than the
G10708
A substitution that leads to the R3500Q mutation, such as the
R3571C28 or other unidentified mutations.
Defective apolipoprotein B could be examined by exclusion mapping with
flanking microsatellite markers.
In summary, LDL receptor gene mutations in the Chinese are largely different from those in other populations. No common mutation of diagnostic value for FH has been established. Mutation analysis in the LDL receptor gene of a large number of Chinese heterozygous FH patients should be continued, and possible functional defects in the LDL receptor caused by the newly found mutations should also be sought. This study population is too small to draw any conclusion about genetic epidemiological features of the Chinese as a whole, and screening for LDL receptor mutations in a large number of clinically diagnosed FH patients is required.
| Acknowledgments |
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Received February 28, 1997; accepted April 14, 1998.
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