Articles |
From the Department of Neurology, University of TexasHouston School of Medicine, Houston, Tex.
Correspondence to Kasturi Ranganna, Department of Neurology, University of TexasHouston School of Medicine, 6431 Fannin, Suite 7.044, Houston TX 77030.
| Abstract |
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Key Words: glyceraldehyde-3-phosphate dehydrogenase sodium butyrate platelet-derived growth factor smooth muscle cells mRNA
| Introduction |
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and ras GTPase, it
inhibits PDGF-BB-induced c-myc expression significantly. SB, a four-carbon short-chain fatty acid, has been shown to exhibit reversible pleiotropic effects on cells. Previous studies indicate that SB is a powerful promoter of cell differentiation17 18 19 20 21 with potent antiproliferative effects22 23 24 25 26 on a variety of normal and tumor cells. It is suggested that SB could be used for cell synchronization because it reversibly blocks the cell cycle at the early G1 phase.27 SB is also used in preliminary clinical trials to treat certain acute leukemias,28 29 and several stable butyrate derivatives have been developed to improve the therapeutic activity of SB.30 Furthermore, SB has been shown to inhibit high margarine diet-induced mammary tumorigenesis in rats.31 Additionally, SB has been shown to affect gene expression at a number of different levels including chromatin structure,23 32 33 34 transcription,35 36 37 38 mRNA stability,39 40 and transcriptional regulatory elements.41 42 43 44
GADPH, a glycolytic enzyme involved in cellular energy production, is generally thought to be an essential enzyme expressed ubiquitously at constant amounts under various physiological conditions. Lately, several studies revealed that expression of GAPDH is substantially and independently altered by cellular activities.45 46 47 48 49 50 During the course of our studies on inhibition of PDGF-BB-induced SMC proliferation by SB,16 we observed altered expression of GAPDH. In this study we describe the effect of SB on PDGF-BB-induced GAPDH expression and activity and discuss the possible significance of GAPDH expression in SMC proliferation.
| Methods |
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-[32P]dCTP,
-[32P]UTP, and hyperfilm-MP were from
Amersham Corporation. TRI reagent was from Molecular Research Center.
Glyderaldehyde 3-phosphate, NAD, actinomycin D, and cycloheximide were
from Sigma. CytoTox 96 was obtained from Promega.
Cell Culture
Rat SMCs were grown in Dulbecco's modified Eagle's medium
supplemented with 10% fetal calf serum, 50 U/mL penicillin, and 50
µg/mL streptomycin, unless otherwise mentioned. The cells were
grown to 80% to 90% confluence in a humidified atmosphere of 5%
CO2 at 37°C, and culture media were changed
every other day. For experiments, SMCs of third to eighth passages were
used by plating onto 150-mm culture dishes. On reaching 80% to 90%
confluence, cells were made quiescent by incubating in Dulbecco's
modified Eagle's medium containing 0.2% fetal calf serum for 48
hours. Concentrations of PDGF-BB and sodium butyrate used in the
studies were 20 ng/mL and 5 mmol/L, respectively,
unless otherwise mentioned. All experiments were repeated a minimum of
two times.
Cell Viability Assay
The CytoTox 96 colorimetric, nonradioactive
cytotoxicity assay kit from Promega, was used for measuring
cytotoxicity. The CytoTox 96 assay quantitatively measures LDH that is
released due to cell lysis. To determine the cytotoxic effect of
experimental additives, the culture media were removed at the end of
the experiment, and cell monolayers were lysed using lysis buffer as
described by the manufacturer. LDH activities in the culture media and
in the corresponding cell lysates were measured using CytoTox 96 to
estimate the percentage of total LDH released due to cell lysis and
total LDH in the culture.
Preparation of Cell Extracts
Cells were washed twice with ice-cold phosphate-buffered saline
and then scraped into ice-cold phosphate-buffered saline. Cell pellets
were collected by centrifugation and maintained at
4°C during the rest of the procedure. Cell pellets were suspended in
lysis buffer containing 0.01 mol/L Tris-HCl, pH 7.4, 0.25
mol/L sucrose, 0.001 mol/L EDTA, and 0.001 mol/L
dithiothreitol48 and incubated on ice for 10
minutes. After incubation, the cell suspension was
homogenized by repeated passage through a 27.5-gauge
needle. The cell lysates were then centrifuged at
100 000g for 60 minutes at 4°C. The resulting cytosolic
fractions were used for GAPDH assay and protein determination.
GAPDH Assay
GAPDH activity was determined by the modification of procedures
described by Krebs51 by Pierce and
Philipson.52 GAPDH activity was measured by
following reduction of NAD to NADH spectrophotometrically. Required
amounts of soluble cells extracts were preincubated in a medium
containing 0.1 mol/L Tris, pH 8.5, 0.83 mmol/L NAD,
0.02 mol/L sodium fluoride, and 0.0033 mol/L
L-cysteine for 5 minutes at room temperature. After
preincubation, reactions were initiated by the addition of 0.0017
mol/L sodium arsenate and 0.23 mmol/L
glyceraldehyde 3-phosphate. The reduction of NAD to
NADH was recorded as a change in absorbance at 340 nm every 10
seconds over a 2-minute period. Control reactions were carried out
similarly, except with no addition of 100 000g soluble
protein extract. One unit of GAPDH activity was the amount that
converts 1 nmol of substrate per minute at room temperature. Three
different concentrations of each cytosolic fraction, in duplicate, were
used for the measurement of GAPDH activity and the activity in the
linear range was used for the analysis. The variation between
the duplicate measurements was not >15%. The protein amounts were
measured by using a Bio-Rad DC protein assay kit.
RNA Preparation and Northern Analysis
Total RNA was extracted using the TRI reagent method. Fifteen
micrograms of total RNA was used for Northern analysis. Total
RNA was denatured in sample-loading buffer containing ethidium bromide
and electrophoresed through 1% agarose formaldehyde
gel.53 RNAs were transferred to an Scheicher &
Schuell MaxS nytran membrane by the downward alkaline transfer
method54 using the Schleicher & Schuell turbo
blotter transfer system. After transfer, RNA was fixed to the nytran
membrane by ultraviolet cross-linking. The GAPDH cDNA probe was labeled
by random priming using a New England Biolabs NEBlot kit and
-[32P]dCTP as recommended by the
manufacturer. RNA blots were probed with random primer-labeled GAPDH
cDNA.55 Autoradiography was
performed using hyperfilm-MP with an intensifying screen at -70°C
for 1 to 3 days. For quantitative comparison of mRNA levels, the
hybridization signals were normalized to the quantities of 28 S rRNA in
the samples. This was determined by scanning the intensity of ethidium
bromide-stained 28 S rRNA using a Bio-Rad GS-670 densitometer.
Quantitation of hybridization signals was accomplished by scanning the
autoradiographs with the Bio-Rad GS-670 densitometer.
Nuclear Run-on Assay
Nuclei were isolated from cells in two 150-mm culture plates for
each treatment using Nonidet P-40 lysis
buffer.56 57 58 The nuclear pellets were suspended
in 100 µL of 50 mmol/L Tris-HCl, pH 8.3, 40%
(vol/vol) glycerol, 5 mmol/L
MgCl2, and 0.1 mmol/L EDTA. Run-on
transcription assays were initiated by adding 100 µL of reaction
buffer containing 10 mmol/L Tris-HCl, pH 8.0, 5
mmol/L MgCl2, 0.3 mol/L KCl,
0.5 mmol/L each of ATP, CTP, and GTP, and 100 µCi of
-[32P]UTP (760 Ci/mmol). Run-on
transcription assays were carried out at 37°C for 30 minutes.
Reactions were terminated by adding 40 µL of 1 mg/mL
RNase-free DNase I and incubation at 30°C for 5 minutes. Labeled RNA
was purified as described in Current Protocols in Molecular
Biology.58 Linearized GAPDH plasmid DNA from
Ambion, Inc was denatured in 0.2 N NaOH for 30 minutes at room
temperature, neutralized with 10 volumes of 6x SSC, and applied on to
nitrocellulose membrane (2 µg/dot) using a Bio-Rad dot-blot
apparatus. The cDNAs were fixed to the membrane by baking
at 80°C under vacuum for 20 to 30 minutes. The blots were
prehybridized for 3 hours at 65°C in 100 mmol/L TES-HCl
buffer, pH 7.4, 0.2% sodium dodecyl sulfate, 10
mmol/L EDTA, 0.3 mmol/L NaCl, 1x Denhardt's
solution and 200 µg/mL yeast tRNA. Hybridization was performed
in the same buffer containing 0.5x106 cpm/mL of
32P-labeled nuclear RNA transcripts for 36 hours
at 65°C. The blots were washed twice with 2x SSC at 65°C for 1
hour each. The blots were then incubated in 2x SSC containing 10
mg/mL of RNase A for 30 minutes at 37°C. After incubation,
blots were washed once with 2x SSC for 1 hour at 37°C, air dried,
and exposed to x-ray film at -70°C. Hybridization signals were
quantitated using the Bio-Rad GS-670 densitometer.
| Results |
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To confirm that the downregulated PDGF-BB-induced GAPDH mRNA expression
by butyrate is not due to a cytotoxic effect of SB, we measured the
release of LDH as an indicator of cytotoxicity (Table 1
). The percentage of total cellular LDH
released due to cellular membrane damage appeared to be almost similar
to that in SMCs treated with PDGF-BB in the absence or presence of
different concentrations of SB. In the absence of PDGF-BB, there was an
insignificant increase in LDH release, and this increase did not change
in the presence of different concentrations of SB. These LDH release
measurements and our previous cell viability analysis by trypan
blue exclusion16 indicated that the
concentrations of butyrate used in the study were not cytotoxic. Since
5 mmol/L SB was not cytotoxic and also inhibited
PDGF-BB-induced SMC proliferation completely,16
we used this concentration for all further studies unless otherwise
mentioned.
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Time-dependent studies were carried out to determine the time course of
PDGF-BB-induced GAPDH mRNA expression and its response to SB (Fig 2A
and Table 2
). Growth-arrested SMCs exposed to
PDGF-BB exhibited time-dependent effects on GAPDH mRNA expression.
Although there was a decrease in the GAPDH mRNA level during the 0.5-
and 1-hour incubations, its level increased with an increase in time of
incubation. At the end of 20 hours of incubation in PDGF-BB, there was
about a 3.9-fold increase in GAPDH mRNA level compared with the
no-addition control. However, the PDGF-BB-induced increase in GAPDH
mRNA level was significantly inhibited when cells were coincubated with
PDGF-BB plus SB. At the end of 20 hours of incubation, there was about
60% inhibition of PDGF-BB-induced GAPDH mRNA expression. Similarly,
preincubation of serum-starved SMCs with SB for 30 minutes followed by
coincubation in SB plus PDGF-BB caused a similar extent of inhibition
of the PDGF-BB-induced GAPDH mRNA level. On the other hand, incubation
of SMCs with SB alone caused about a 20% decrease in the level of
GAPDH mRNA at the end of a 20-hour incubation compared with the
no-addition control.
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GAPDH Activity
To determine whether the level of GAPDH mRNA was reflected in the
level of GAPDH catalytic activity, cytosolic extracts were prepared for
the measurement of GAPDH catalytic activity. We examined the effect of
different concentrations of SB in the absence and presence of PDGF-BB
on GAPDH activity of SMCs (Table 3
). In
the absence of PDGF-BB, serum-starved SMCs exhibited a slight increase
in GAPDH activity in the presence of 1 to 3 mmol/L SB and
no effect at 5 mmol/L SB. Exposure of SMCs to PDGF-BB
resulted in about a 2.5-fold increase in GAPDH catalytic activity, and
this activity was inhibited by butyrate in a concentration-dependent
manner. At 5 mmol/L concentration, SB caused about 45%
inhibition of PDGF-BB-enhanced activity.
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Time course studies were carried out by exposing serum-starved SMCs to
5 mmol/L SB, in the absence and presence of PDGF-BB and
measuring GAPDH activity at different time intervals of exposure up to
24 hours (Table 4
). Cells exposed to
PDGF-BB exhibited an increase in GAPDH activity after 6 hours of
exposure and at the end of 24 hours of incubation there was about a
3-fold increase in GAPDH activity compared with no-addition control
SMCs. Coincubation of SMC with PDGF-BB plus SB resulted in the
inhibition of PDGF-BB-induced GAPDH activity throughout the exposure
time, and at the end of 24 hours of incubation there was about 50%
inhibition of PDGF-BB-induced GAPDH activity. However, compared with
no-addition control, there was about a 1.5-fold increase in GAPDH
activity. Similarly, preincubation of SMCs with SB for 30 minutes and
subsequent incubation in PDGF-BB plus SB resulted in the inhibition of
PDGF-BB-induced GAPDH activity throughout the incubation period. At the
end of 24 hours of incubation, there was about a 1.3-fold increase in
GAPDH activity over the no-addition control. In the absence of PDGF-BB,
SB had no significant effect on GAPDH catalytic activity.
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Transcription of GAPDH Gene
To determine whether the inhibition of PDGF-BB-induced GAPDH
expression by SB is due to an altered rate of GAPDH gene transcription,
nuclear run-on experiments were performed (Fig 3
). Serum-starved SMCs exhibited an
increase in the rate of transcription of GAPDH gene in response to
PDGF-BB, and it was about 3-fold over the no-addition control. The
PDGF-BB-stimulated increased rate of transcription of GAPDH gene was
reduced by treating the cells with SB. The extent of reduction in the
PDGF-BB-induced increased rate of transcription of the GAPDH gene was
similar irrespective of whether SMCs were preexposed to SB or not
before coincubation in PDGF-BB plus SB, and it was about 50%. However,
SB by itself had no significant effect on GAPDH gene transcription.
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To confirm that the inhibition of PDGF-BB-induced expression of GAPDH
mRNA by SB was due to a transcriptional mechanism, investigations were
carried out in the presence of inhibitors of transcription
and protein synthesis (Fig 4
). Exposure
of SMCs to PDGF-BB for 24 hours caused an increase in GAPDH mRNA
compared with the no-addition control. This increase in GAPDH mRNA was
reduced to about 50% by treating SMCs with PDGF-BB plus SB. Treatment
of SMCs with the transcription inhibitor, actinomycin D,
alone caused about 20% reduction in GAPDH mRNA compared with the
no-addition control. An almost similar extent of reduction in GAPDH
mRNA level was observed in SB-, PDGF-BB-, and PDGF-BB plus SB-treated
cells when they were coincubated with actinomycin D. In the presence of
cycloheximide, a protein synthesis inhibitor,
PDGF-BB-enhanced GAPDH mRNA was significantly reduced (Fig 4
). However
in PDGF-BB plus SB-treated cells, cycloheximide treatment did not
relieve the inhibition of PDGF-BB-induced GAPDH mRNA level by SB. The
extent of GAPDH mRNA expression in PDGF-BB plus SB-treated SMCs was
almost similar in the absence and presence of cycloheximide. This
observation suggests that inhibition of PDGF-BB-induced GAPDH mRNA
level by SB could be due to an alteration in transcriptional
mechanism(s), which may not depend on on-going protein synthesis.
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SB may also potentially destabilize PDGF-BB-induced GAPDH mRNA. To
account for this possibility, SMCs were exposed to PDGF-BB and PDGF-BB
plus SB in the presence of actinomycin D, and the rate of decline in
GAPDH mRNA level was measured over a period of 24 hours (Fig 5
). Both PDGF-BB- and PDGF-BB plus
SB-treated cells exhibited a decline in the rate of GAPDH mRNA level in
the presence of actinomycin D, and the rate of decline was not
significantly different in PDGF-BB- and PDGF-BB plus SB-treated SMCs.
The half-lives of GAPDH mRNA were about 22 and 17.5 hours in
PDGF-BB-and PDGF-BB plus SB-treated SMCs, respectively. These
observations indicate that inhibition of PDGF-BB-induced GAPDH mRNA
expression by SB could not be due to destabilization of PDGF-BB-induced
GAPDH mRNA.
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To be sure that the concentrations of actinomycin D and cycloheximide
used in the investigations were not cytotoxic and the data obtained
were not a reflection of their cytotoxicity, measurement of LDH release
due to cell lysis were performed (Table 5
). The percentage of total cellular LDH
release was <27% for all the treatments except for the no-addition
control cells treated with actinomycin D. The percentage of total LDH
released in the presence of cycloheximide was comparatively less in all
the treatments, which could be due to inhibition of LDH protein
synthesis.
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| Discussion |
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GAPDH is a key regulatory glycolytic enzyme that is involved in cellular metabolism. Until recently this enzyme was thought to be expressed constitutively at constant amounts in cells. In fact, expression of GAPDH mRNA was frequently used as an internal standard in gene transcription studies. However, several studies reported that expression of GAPDH mRNA was significantly altered due to increased cell growth both in normal45 and cancerous cells,46 47 on exposure to hormone,48 growth factors, serum,45 and drugs,49 and in response to hypoxia.50 Our studies indicate that GAPDH expression was altered depending on the proliferative state of SMCs. Exposure of quiescent SMCs to PDGF-BB, which caused 4- to 5-fold increases in SMC proliferation,16 also stimulated about a 3-fold increase in the rate of GAPDH gene transcription, 2.5- to 3.9-fold increases in GAPDH mRNA level, and 2.5- to 3-fold increases in GAPDH catalytic activity at the end of 24 hours of exposure. These observations suggest a relationship between SMC proliferation, cellular energy demand, and GAPDH expression. This relationship is substantiated by the effect of SB on PDGF-BB-induced SMC proliferation and GAPDH expression. SB inhibited both PDGF-BB-induced SMC proliferation16 and GAPDH expression in a concentration-dependent manner, suggesting that the GAPDH expression is associated with cell proliferation. Since cell proliferation is an energy-demanding process caused by increased cellular metabolism, it requires an energy-generating reaction. This need appears to be provided by the upregulation of GAPDH. Thus, the relevance of altered GAPDH expression in PDGF-BB- and PDGF-BB plus SB-treated cells appears to be evident. A similar relationship between cell proliferation, energy demand, and GAPDH expression was observed in normal, cancerous, and transformed cells.45 46 47 59 60 61 62 63 In fact, GAPDH was identified as one of the cancer-associated proteins.46 These observations indicate a link between increased expression of GAPDH, energy consumption, and rapid cell growth rate. This possible link could offer a means to suppress growth in cancer and atherosclerosis by diminishing the key reaction in glycolysis. In this regard, the use of SB appears to be promising. Although no other previous studies have shown an effect of SB on GAPDH expression, our present study revealed that SB significantly inhibited PDGF-BB-induced GAPDH mRNA expression as well as its activity, in addition to inhibition of PDGF-BB-induced SMC proliferation. This observation suggests that one of the possible mechanisms of inhibition of SMC proliferation could be by limiting the cellular energy generation through the regulation of GAPDH expression.
Although SB at a 5 mmol/L concentration inhibited PDGF-BB-induced SMC proliferation completely,16 it did not completely inhibit PDGF-BB-stimulated GAPDH expression, irrespective of whether SMCs were preexposed to SB or not. Because SB is a potent antiproliferative agent22 23 24 25 26 and a strong promoter of cell differentiation,17 18 19 20 21 it may promote the conversion of SMCs to the contractile phenotype by inhibiting the proliferative phenotype. Probably this process requires a certain amount of metabolic energy although not as much as may be required for cell proliferation. This possibility may explain the incomplete inhibition of PDGF-BB-induced GAPDH expression by SB. However, there may be other explanations for the incomplete inhibition of PDGF-BB-induced GAPDH expression by SB. Evidence indicates the presence of GAPDH in the nucleus, exhibiting functions that are unrelated to glycolysis. GAPDH is identified as a DNA-binding nuclear protein influencing transcription and replication of DNA.64 65 66 67 68 69 It is recognized as a DNA repair enzyme exhibiting uracil DNA glycosylase activity,67 which is cell cycle-regulated in human fibroblasts.68 In addition, GAPDH is shown to affect human parainfluenza virus type 3 gene expression through interaction with viral cis-acting regulatory RNAs.69 Because glycolysis does not occur within the nucleus, these observations suggest that GAPDH may have a dual role in cellular function: one related to glycolysis in the cytoplasm and the other associated with its presence in the nucleus. The observation that GAPDH is present in both cytoplasm and nucleus raises the possibility that it may shuttle between the two compartments. Although as yet there is no direct evidence that nuclear residence of GAPDH requires any protein modification, it is shown that only tyrosine-phosphorylated LDH, another glycolytic enzyme is restricted to the cell nuclei.70 At the moment, we do not know whether SMC nuclei contain GAPDH, but its presence as a nonhistone nuclear protein is shown in other cells.64 65 66 67 Because it is well known that SB causes acetylation and phosphorylation of chromatin proteins,17 18 19 20 21 22 23 24 71 72 it is possible that in PDGF-BB plus SB-treated SMCs, a fraction of GAPDH may be translocated to the nuclei as a result of protein modification,, thereby regulating DNA replication. This possibility could also explain why there was no complete inhibition of PDGF-BB-induced GAPDH expression by SB. Further investigations are required to identify potential nuclear GAPDH and its possible role in the inhibition of PDGF-BB-induced SMC proliferation by SB. In this context, it is interesting to note that replication of M-13 DNA is inhibited by GAPDH.66
Many reports indicate that SB modulates gene expression in a variety of cells, and within a cell, it causes different effects on specific mRNAs.36 43 73 Although in our study PDGF-BB-induced upregulation of GAPDH involves both transcriptional and translational mechanisms, inhibition of PDGF-BB-induced upregulation of GAPDH by SB appears to involve a transcriptional mechanism. Nuclear run-on analysis demonstrated that reduction in the PDGF-BB-induced GAPDH mRNA level in PDGF-BB plus SB-treated cells was caused by a reduction in the rate of transcription of GAPDH mRNA. Furthermore, transcription and translation inhibitor studies revealed that SB-inhibited, PDGF-BB-induced GAPDH expression was not due to altered message stability or activation of a labile "repressor" protein. In the absence of new transcription, the half-lives of GAPDH mRNAs of PDGF-BB- and PDGF-BB plus SB-treated SMCs were not significantly altered, and in the absence of new protein synthesis, the SB-inhibited GAPDH expression was not relieved. However, we do not know the exact transcriptional mechanism by which SB alters GAPDH expression. A large amount of the literature suggests that SB alters chromatin structure by modifying chromatin proteins such as histones and nonhistones by acetylation and phosphorylation.17 23 33 34 74 75 These and other changes in chromatin proteins are believed to disrupt nucleosome interaction with the key regulatory regions of DNA involved in transcriptional control, thus enabling transcription factors to gain access to their recognition sequences and activate transcription. Evidence also indicates that SB may alter gene activation by inducing both hypomethylation and hypermethylation of DNA.74 75 Other studies report that SB regulates transcription through modification of activities of selected transcription regulatory proteins, which affects their interaction with proteins bound to promoters. These observations suggest that specific sequences may be acted on in trans by SB-dependent factor modification.42 43 44 76 Because early growth response genes such as c-myc, c-fos, and c-jun affect cell proliferation by modulating expression of target genes by regulating their transcription rate, it is possible that our observation of inhibition of PDGF-BB-induced c-fos, c-jun, and particularly c-myc by SB16 may have significance in the inhibition of PDGF-BB-induced GAPDH expression as well as SMC proliferation. Although our present study did reveal cell proliferation-related regulation of GAPDH expression, we do not have any direct evidence that c-myc, c-fos, or c-jun may be involved in the regulation of GAPDH gene expression. In this context it is interesting to note that Mansur et al68 reported a cell cycle-regulated GAPDH, which exhibited a characteristic temporal sequence of expression in relation to DNA synthesis. However, further studies are required to determine which, if any, of the mechanisms mentioned mediated the inhibition of PDGF-BB-induced GAPDH expression by SB.
| Selected Abbreviations and Acronyms |
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| Acknowledgments |
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Received February 6, 1997; accepted August 12, 1997.
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