Articles |
From the Clinical Diabetes Unit, Division of Endocrinology and Diabetes (I.L., R.W.J.) and the Division of Gastroenterology (F.N.), University Hospital, Geneva, Switzerland.
Correspondence to Dr Richard W. James, Clinical Diabetes Unit, Division of Endocrinology and Diabetes, University Hospital, 24 rue Micheli-du-Crest, 1211 Geneva 14, Switzerland. E-mail Richard-James{at}hcuge.ch
| Abstract |
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Key Words: atherosclerosis HDL LDL oxidative stress
| Introduction |
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The preceding studies focused on a polymorphism affecting position 191 of the human PON gene. This mutation modulates the hydrolytic activity of PON toward some, but not all, exogenous substrates.13,14 A second common polymorphism affects amino acid at position 54, giving rise either to leucine (L allele) or methionine (M allele). In a very recent study, we demonstrated that the polymorphism is associated with differences in serum levels of PON15: L allele carriers have significantly higher concentrations than M allele carriers. This translates into highly significant differences in enzyme activities with all substrate types. Given the purported, antiatherogenic role of PON, the 54 polymorphism would appear of particular clinical and physiologic relevance.
It is not known whether the 54 polymorphism is causally implicated in modulated serum levels of PON or a marker for other factors that influence the enzyme. The latter may be of two basic origins. One could be differential stability of peptides coded by the L and M alleles, perhaps linked to their association with HDLs. The latter appears important in maintaining serum PON activity, as illustrated by decreased activity in patients with HDL deficiencies16,17 and the significant, positive correlation between serum concentrations of PON and apolipoprotein A-I, the structural peptide of HDLs.18 A second factor could be differential expression (encompassing synthesis, processing, and/or degradation) of the L and M alleles. The present study investigated the latter hypothesis, namely that modulated expression of alleles associated with the 54 polymorphism contributes to variations in serum concentrations of PON.
| Materials and Methods |
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cDNA Synthesis and Polymerase Chain Reaction (PCR)
Amplification
To eliminate any possibility that the 54 polymorphism may be
associated with conformational changes of mRNA that could affect primer
annealing and subsequent amplification, three sets of primers distant
from each other were used for cDNA synthesis.
Oligonucleotide primer I, II, or III (30 pmol; see
below) was mixed with total liver RNA (0.2 to 2 µg) in a final volume
of 10 mL. The mixture was heated (10 minutes, 70°C) and immediately
put on ice. Subsequently, 4 mL of first-strand buffer (5x
concentrated; Gibco BRL), 2 mL of 100 mmol/L
dithiothreitol, 2 mL of dNTPs solution (10 mmol/L each),
and 20 U of Mu-MLV reverse transcriptase (Gibco BRL) were added and
incubated 1 hour at 37°C. The reaction was terminated by heating at
94°C for 5 minutes.
For the allele mixing experiment, total RNA from the liver of an MM homozygote was added in increasing amounts (from 0.2 to 2 µg with 0.2-µg increments) to 1 µg of total RNA from the liver of an LL homozygote. These mixtures were used for cDNA synthesis as described above.
PCR amplification of the PON cDNA fragment encompassing the 54 polymorphism was performed with 2 mL of the cDNA synthesis reaction in a total volume of 30 mL containing 1pmol of each PCR primer (see below), Taq polymerase buffer (1x concentrated; Pharmacia), 0.25 mmol/L of each dNTP and 2 U of Taq polymerase (Pharmacia). The program for PCR was 25 cycles of denaturing (94°C, 30 seconds), annealing (55°C, 50 seconds), and extension (72°C, 30 seconds). The final extension was at 72°C for 5 minutes. The PCR products were purified by electrophoresis on 2% agarose gel and extracted from the gel using QIAquick gel extraction kit (Qiagen).
The primers for cDNA synthesis were (1) TCATCTGT GAATGTACTAATCCCATG, (2) CCAATTAGCAT GCTTTTCATACACATG, and (3) ATGGCATGGGTG CAAATCGG complementary to positions 342 to 368, 736 to 762, and 1073 to 1092, respectively, of PON mRNA. The PCR primers were (4) GATCCCTTTGTCTATCCCCG and (5) TTTAATCCAGAGCTAATGAAAGCC19 complementary to positions -23 to -4 and 186 to 209 of PON cDNA. The sequence of these primers is based on the published sequence of PON cDNA,20 and the numbers start from the adenine of the initiation codon.
Restriction Analysis of PCR Products
Purified PCR products were end-labeled using T4
polynucleotide kinase (Pharmacia) and
-[32P]ATP according to Sambrook et
al.21 The kinase was subsequently
inactivated by heating to prevent further labeling of
digestion products. Restriction analysis of labeled PCR
products was performed with NlaIII (New England Biolabs) using an
excess of enzyme to ensure complete digestion. Reaction products
were separated on 8% polyacrylamide gels and visualized by
autoradiography.21 The area and
density of the signals on the autoradiogram were
analyzed using a computing densitometer (Molecular Dynamics)
and quantified using the ImageQuant software package. Signal
intensities of the analyzed samples were compared with the
paired Student's t test.
| Results |
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Allele Mixing Experiment
The allele mixing experiment was designed to demonstrate the
sensitivity of the procedure to changes in the relative concentrations
of L and M type mRNA. Fig 2A
shows
autoradiograms of the restriction products where
only radioactive, end-labeled fragments (46 bp for the M allele and
208 bp for the L allele and a common 24 bp fragment) are visible.
These autoradiograms were scanned, and the ratios of
the radioactive signals corresponding to the end-labeled fragments of
the L and M alleles (208/46) were compared (Fig 2B
). Quite clearly,
as the proportion of M type total mRNA in the analyzed sample
was raised, there was a corresponding decrease in the L:M signal ratio
reflecting the increase in the amount of M allele digestion
product.
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Analyses of Heterozygotic LM Livers
In the second set of experiments, total mRNA obtained from liver
biopsies of heterozygous LM subjects was analyzed. Results of a
representative experiment are shown in Fig 3
. The relative intensities of
end-labeled fragments derived from restriction digests of L and M
alleles are given in the Table
. Each
value is the mean of three analyses. A further control involved
cDNA synthesis with three different primers, as indicated in the Table
.
For each liver sample, a reproducible L:M ratio was observed, as
illustrated by the relatively low coefficients of variation (which
expresses the SD as a percentage of the sample mean; Table
). For the
majority of samples (8 of 10), the L:M ratio was substantially higher
than 1.0, averaging 2.89±1.31 with considerable variation between the
8 samples (range, 1.33 to 4.60). One sample gave a ratio close to 1.0,
while the other sample indicated an excess of the M allele
product (mean ratio, 0.82; Table
). Overall, a significantly higher
yield of the L allele product (ratio, 2.51±1.41,
P<.01) was observed for the 10 liver samples.
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| Discussion |
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Direct comparisons of total amounts of PON mRNA in liver samples from LL and MM homozygotes by Northern hybridization or reverse transcriptase-PCR are not feasible because between-liver factors (quality of biopsy samples, extraction of mRNA, or PCR amplification) are too variable. Thus, we adopted an approach using liver samples from heterozygotes. It ensured that the L and M type genes were in identical conditions before extraction and that mRNAs, cDNAs, and PCR products were processed in an identical manner. This eliminates the influence of intersample variations on the L:M allele ratio. The second particularity of our approach is to label only the end nucleotides of the PCR products. Thus, differences in the size of the restriction fragments do not affect the amount of radioactivity per fragment. Other potential sources of variation are the cDNA synthesis and PCR amplification steps. As the annealing sites for primers during cDNA synthesis are distant from the 54 polymorphism (nucleotide 163), it is unlikely that the interchange influences the efficiency of cDNA synthesis. A similar consideration applies to the PCR amplification step: the annealing sites for primers are not close to the interchange point and the interchange (A to T) does not change the denaturing temperature of double-stranded PCR product during amplification. In consequence, we consider it unlikely that there is preferential conversion of one type of mRNA to cDNA or preferential amplification of one type of cDNA. Thus, differences in the amounts of L and M allele products can only be explained by differences in amounts of L and M type mRNA.
To test the sensitivity of the method, an allele mixing experiment was undertaken using total mRNA from MM and LL homozygotes. It was not possible to quantify the PON mRNA in total extracts from liver biopsies. In addition, only 1 MM homozygote biopsy was available and contained a small amount of tissue. Thus, it was not possible to prepare mixtures of predetermined L:M ratios and confirm that the PCR products gave the same ratios. However, we showed that across the spectrum of ratios used, each increment of total mRNA from the MM liver caused a decrease in the L:M PCR product ratio. Therefore, we concluded that the approach would give a valid indication of the relative amounts of the L and M PON mRNA in heterozygotic livers and be sensitive to relatively minor changes in the ratio.
Our results quite clearly demonstrate significantly higher levels of L
allele mRNA compared with M allele mRNA in 8 of 10 samples,
including all 4 normal livers. This is consistent with our
previous data showing significantly higher concentrations of PON
protein in serum from carriers of the L allele and supports our
hypothesis that modulated expression of the alleles explains
differences in serum PON levels. The observation merits two comments.
First, pathologic changes affected 6 of the livers, and this could
conceivably affect PON synthesis. Little is presently known
concerning regulation of PON transcription, but it appears unlikely
that different liver disorders would have the same modulatory impact on
PON synthesis. Moreover, 4 of the pathologic samples gave results
similar to those of the healthy liver samples. Secondly, 2 liver
samples gave an L:M product ratio close to or below 1.0, indicating
no excess of the L allele. In our previous
studies15 we noted a spectrum of PON
concentrations for L and M homozygotes, (LL, 38.6 to 178.6
µg/mL; MM, 25.7 to 111.01 µg/mL). A small percentage
of MM carriers have PON levels significantly higher than LL
homozygotes. This is compatible with an L:M ratio
1.0. We also noted
a large variation (from 1.33 to 4.60) in the ratios of L to M type
mRNA. This is also compatible with our study on serum levels of PON
protein in which relative concentrations of L and M isoforms could vary
up to 7:1 (based on comparisons of concentration ranges in homozygotes,
178.6/25.7). Thus, a minimal interpretation of our data is that there
is differential expression of L and M alleles and that whatever
factor(s) are implicated, they are usually, but not uniformly,
associated with the L allele. It remains to be determined what
mechanisms (synthesis, stability, processing, and/or degradation)
contribute to differences in allele product levels.
In conclusion, our observations suggest that modulated expression of alleles defined by the 54 polymorphism contributes to observed differences in serum PON concentrations. Further studies are necessary to identify factors responsible for preferential expression of the L allele as these could influence the susceptibility of LDL to oxidation, a pivotal step in the atherogenic process. In this context, Hassett et al20 observed differences in the 3' uncoded region of cDNAs with a longer sequence of the L allele, which could stabilize it and favor its translation. However, as this observation is based only on two independent cDNA sequences, much further work is required. It is also probable that other factors influence serum levels of PON protein. Association of the peptide with HDLs is a strong candidate in this respect,16,17 while recent studies22 have indicated that dietary factors could modulate PON mRNA levels.
| Acknowledgments |
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Received May 7, 1997; accepted July 14, 1997.
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