Articles |
From the Departments of Medicine (R.K.K., L.A.M., M.B.H.) and Pathology (S.G.S., M.B.H.), State University of New York at Stony Brook.
Correspondence to Mae B. Hultin, MD, Division of Hematology, Health Sciences Center T-15/040, Stony Brook, NY 11794-8151. E-mail Mhultin{at}mail.som.sunysb.edu
| Abstract |
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A mutation at nucleotide
20 210 in the 3'UTR was confirmed by direct DNA sequencing. The
similar increased prevalence of the 3'UTR mutation in subjects with
venous thrombosis in our population and in the Dutch population studied
by Poort et al suggests that this mutation is an important risk factor
for venous thrombosis in the general white population.
Key Words: prothrombin genetic mutation venous thrombosis arterial thrombosis polymerase chain reaction
| Introduction |
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The prothrombin gene on chromosome 11 consists of 21 kb, with 14 exons,
13 introns, a 5'UTR, and a 3'UTR.8 9 The mutation reported
by Poort et al is a single-nucleotide G
A transition at
position 20 210 in the sequence of the 3'UTR. No specific function has
been defined for this 3'UTR, although some effect on transcriptional
regulation was hypothesized.8 The mutation was found in
2% of the Dutch population, in 6% of subjects with a first episode of
deep venous thrombosis, and in 18% of subjects with a personal and
family history of venous thrombosis.8
We hypothesized that there would be an increased prevalence of the prothrombin gene mutation in subjects with a history of deep venous thrombosis in our clinic population. We chose to examine the prevalence of this 3'UTR prothrombin mutation in a case-control study of patients with a history of deep venous thrombosis and control subjects, who were recruited from the anticoagulation and hematology/oncology clinics at the University Medical Center at Stony Brook on Long Island. We also chose to test the secondary hypothesis that the presence of the 3'UTR prothrombin mutation increases the risk of arterial thrombosis. For this aim, we recruited subjects with a history of arterial thrombosis (coronary, cerebral, or peripheral vascular disease).
| Methods |
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Study Design
A case-control design was selected with recruitment designed to
yield a control group that would be comparable to and twice the size of
each thrombosis group. A sample size estimate of
25 subjects per
thrombosis group and 50 control subjects was determined by calculating
a sample size based on the prevalence of the prothrombin mutation in
the report of Poort et al. This estimate was generated by assuming a
value of P<.05 and a power of 80% using a two-tailed
estimate. To confirm the familial nature of abnormal PCR results in
subjects with thrombosis, we also recruited available family members
for PCR testing. Measurement of plasma prothrombin activity was planned
in the subjects who were not on anticoagulant therapy with
warfarin.
Study Subjects
Written informed consent was obtained from all subjects.
The study was approved by the Committee on Research in Human Subjects
at the University at Stony Brook, following the principles of the
Declaration of Helsinki. Both men and women, aged 20 to 77 years (mean
age, 55 years; 68 men and 32 women), were enrolled on a volunteer basis
from the patients who were being followed up by the anticoagulation and
hematology/oncology clinics and from personnel at the University
Medical Center at Stony Brook. There were 21 patients in the venous
thrombosis group (12 men and 9 women; mean age, 50 years) and 29
patients in the arterial thrombosis group (22 men and 7
women; mean age, 59 years). Inclusion criteria for subjects required
that they had a documented history of thrombosis with one or more
episodes of deep venous thrombosis or pulmonary embolism or a
documented history of coronary artery disease, ischemic
cerebrovascular disease, or peripheral ischemic
arterial disease. Subjects on anticoagulation therapy for
cardiac valve prostheses, cardiomyopathy of
nonischemic etiology, or atrial fibrillation without documented
coronary artery disease were excluded. All patients eligible by
these criteria agreed to participate. The criterion for recruitment of
control subjects was the lack of any history of a thrombotic disorder
(the reverse of the inclusion criteria for thrombosis subjects).
Control subjects were matched for age and sex and ranged from 22 to 79
years old (mean age, 55 years), including 34 men (mean age, 57 years)
and 16 women (mean age, 51 years). The control group included 18
healthy subjects and 32 subjects with a variety of nonthrombotic
hematologic and oncologic diagnoses, including various cytopenias,
leukemia, lymphoma, and solid tumors, with no more than 4 subjects
having the same diagnosis. None of these 32 subjects had a history of
venous or arterial thrombosis.
Blood Collection and DNA Isolation
Blood samples were collected from each subject after written
informed consent was obtained. A total of 5 mL of blood was collected
from each patient by venipuncture into a sterile evacuated
tube containing EDTA and into tubes containing 3.8% sodium citrate.
Plasma was separated by centrifugation at
3000g for 15 minutes at room temperature and then stored in
0.5-mL aliquots at -80°C. Genomic DNA was isolated from white blood
cells in the whole-blood EDTA samples by using the Puregene DNA
isolation kit and stored at 4°C in 0.1-mL aliquots.
PCR Analysis
DNA samples were analyzed for genetic variations
in the prothrombin gene by PCR, as reported by Poort et
al.8 The 3'UTR of the prothrombin gene was amplified by a
Tempcycler (COY Lab Products, Inc) using the primer 5'
TCTAGAAACAGTTGCCTGGC-3' (nucleotides 19 889 to 19 908)
and a mutagenic primer 5'-ATAGCACTGGGAGCATTGAA*GC-3'
(nucleotides 20 233 to 20 212). This mutagenic
oligonucleotide introduced a novel HindIII
restriction site into the amplified gene fragment in the presence of
the nucleotide 20210 A allele. PCR was carried out for
35 cycles consisting of 94°C x1.25 minutes, 55°C x1 minute, and
72°C x3 minutes. PCR products were digested with the
HindIII restriction enzyme. The DNA fragments of the
restriction digest were fractionated by size by agarose gel
electrophoresis on 3% MetaPhor Agarose gel and stained with ethidium
bromide. Water blanks (no DNA) were included in each PCR run.
DNA Sequencing
PCR products of those subjects who were heterozygous or
homozygous for the mutation were extracted from 4% NuSieve 3:1 agarose
gels and purified with the QIAEX II gel extraction kit. Purified PCR
gene fragments from 5 subjects were sequenced using the ABI prism dye
terminator cycle sequencing ready reaction kit and 370A Applied
Biosystems Inc DNA sequencer (Perkin-Elmer). Primers for the sequencing
were 5'-GATCAGTTTGGAGAGTAGGGG-3' (nucleotides 20 096 to
20 116) and 5'-TGGTGGATTCTTAAGTCTTCT-3' (nucleotides
20 304 to 20 284) based on the sequence data of Degen and
Davie.9
Prothrombin Activity Assay
Prothrombin clotting activity was measured in the 50 control
subjects and 6 offspring of 2 subjects with the 3'UTR prothrombin
mutation. The method of assay and the materials used were identical to
those used in a previous report from this laboratory.10
Results were expressed as a percentage of the amount of prothrombin in
pooled normal plasma, which was arbitrarily designated as 100%.
Statistical Analysis
The data were analyzed using Fisher's exact
test11 for comparison of the prevalence of the prothrombin
gene mutation in subjects with or without a history of venous
thrombosis and for comparison of subjects with or without a history of
arterial thrombosis. This test was preferable to the
2 test owing to the small values of the cells in
the 2x2 tables seen in Tables 1
and 2
. A value of P<.05
was considered statistically significant. An OR was calculated for the
comparison between the two groups.12 The Wilcoxon
two-sample rank sum test was used for comparison of prothrombin
activity in subjects with or without the prothrombin gene
variant.13
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| Results |
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As shown in Table 1
, we found a
statistically significant increase in the prevalence of the 3'UTR
prothrombin mutation in those subjects with a history of venous
thrombosis (4/21, or 19%) in comparison with subjects without a
history of thrombosis (1/50, or 2%) (P<.0245 by Fisher's
exact test). The OR for this comparison revealed that the presence of
the mutation significantly increased the risk of thrombosis (OR, 11.5;
confidence interval, 1.2 to 110.5). The prevalence of the 3'UTR
prothrombin gene mutation in subjects with a history of
arterial thrombosis (0/29, or 0%) was not different from
that in the control subjects without a history of thrombosis (1/50, or
2%) as shown in Table 2
. The allele
frequency of the 20 210 A allele was 11.9% in subjects with a
history of venous thrombosis and 1.0% in subjects without a history of
thrombosis. One subject with a history of venous thrombosis was
homozygous for the 3'UTR prothrombin gene mutation, while the 3 other
subjects with venous thrombosis were heterozygous.
The 4 subjects with a history of venous thrombosis and the 3'UTR prothrombin gene mutation were further investigated by chart review and by additional interviews and testing. All 4 subjects had been placed on long-term warfarin therapy by their referring physicians because of recurrent deep venous thrombosis or chronic venous insufficiency after an episode of severe proximal deep venous thrombosis; their ages at the first episode of thrombosis ranged from 43 to 66 years. None of the 4 subjects was found to have the factor V Leiden variant, protein C deficiency, protein S deficiency, or antithrombin deficiency. Two of the 4 subjects had 1 family member with deep venous thrombosis or pulmonary embolus. Three of the 4 subjects are entirely of Italian ancestry, including the homozygous subject, and 1 is entirely of Irish ancestry, as determined by a detailed family history. The homozygous subject had 1 parent with a history of pulmonary embolus and no family history of consanguinity, with paternal and maternal ancestry from two separate regions of Italy. He developed central retinal vein occlusion at the age of 66, deep venous thrombosis and pulmonary embolus at age 69, and recurrent deep venous thrombosis at age 70, after warfarin therapy was stopped for 3 months because of a gastrointestinal hemorrhage. He is again being treated with long-term warfarin therapy; hyperhomocysteinemia was also identified and responded to folic acid and vitamin B6 therapy.
Two of the 4 subjects had family members who consented to testing for the prothrombin gene mutation and for plasma prothrombin activity. Each of these 2 subjects was found to have at least 1 child who was heterozygous for the mutation. The prothrombin activity in these two heterozygous adult children was 127% and 114% respectively, compared with 88%, 88%, 85%, and 80% for 3 children and 1 grandchild, respectively, who did not have the mutation. The prothrombin activity in the 1 subject with the mutation from the control group was 139%; this subject had 1 uncle with a history of deep venous thrombosis and family ancestry that was entirely Swedish. The mean prothrombin activity of 127% in 3 individuals with the mutation (2 family members and 1 control subject) who were not taking warfarin was significantly elevated compared with the mean of 81% in 50 individuals without the mutation who were also not on warfarin (P<.02 by Wilcoxon rank sum test).
The family pedigree is shown for one of these families (Fig 2
). The proposita and her daughter, who
also had a history of deep venous thrombosis, were both heterozygous
for the 20 210 A allele, while the grandson was homozygous for the
normal allele. Evaluation of the proposita had been negative for
the presence of factor V Leiden, antithrombin deficiency, protein C
deficiency, or protein S deficiency. The medical history of the Italian
parents of the proposita could not be obtained.
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DNA sequencing of the 3'UTR of the prothrombin gene from 4 subjects identified by PCR as positive for the mutation and from 1 normal control subject confirmed the presence of the 20 210 A allele in the 4 subjects with an abnormal PCR and also confirmed the homozygosity of 1 of these subjects for this allele. Sequence analysis failed to identify any other nucleotide variations.
| Discussion |
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We did not find the 3'UTR mutation in our subjects with arterial thrombosis, suggesting that it is not an important risk factor for arterial thrombosis. However, few of our subjects with arterial thrombosis were <50 years old, and most had coronary artery disease. Our study was not designed with the power to detect a possible relation of the 3'UTR mutation to the risk of premature arterial thrombosis or to the risk of thrombosis in various subsets of patients, such as young adults with ischemic stroke.
An elevation in plasma prothrombin activity has been shown by Poort et al to accompany the 3'UTR prothrombin gene mutation.8 Our measurements of prothrombin activity in subjects not on warfarin therapy were highly consistent with those findings. Because our subjects with thrombosis were on long-term warfarin therapy, we did not measure the prothrombin activity in these subjects, as it would have primarily reflected the influence of warfarin rather than the effect of the mutation. It is likely that the elevation in plasma prothrombin activity leads to greater thrombin generation when coagulation is activated, thereby increasing the risk of overt clinical thrombosis, but this hypothesis remains to be directly tested.
We did not specifically exclude subjects with known genetic defects, such as protein S deficiency or factor V Leiden, from our study population, and yet none of the subjects in whom we found the 3'UTR prothrombin gene mutation had a second genetic risk factor identified. Individuals who have more than one genetic risk factor for venous thrombosis, such as the prothrombin mutation and factor V Leiden, appear to have a higher risk for thrombosis than those with only one risk factor identified.8 It was fortuitous that each of our subjects found to have the 3'UTR prothrombin gene mutation could precisely identify his or her European ancestry to be entirely from a single country (Italy, Ireland, or Sweden). Although we cannot prove that this gene mutation was inherited from a parent in each case rather than arising by de novo mutation, the former possibility is more likely; these data suggest that the mutation is widely distributed in northern and southern Europe and may be present in the general white population. Our finding of a 19% prevalence of the prothrombin gene mutation in venous thrombosis patients attending an anticoagulation clinic supports the utility and probable importance of testing for this mutation in patients with a history of venous thrombosis.
| Selected Abbreviations and Acronyms |
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| Acknowledgments |
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Received April 21, 1997; accepted July 29, 1997.
| References |
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2.
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Familial thrombophilia due to a previously unrecognized mechanism
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protein C: prediction of a cofactor to activated protein
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3. Bertina RM, Koeleman BPC, Koster T, Rosendaal FR, Dirven RJ, de Ronde H, van der Velden PA, Reitsma PH. Mutation in blood coagulation factor V associated with resistance to activated protein C. Nature. 1994;369:64-68.[Medline] [Order article via Infotrieve]
4. Griffin JH, Evatt B, Zimmerman TS, Kleiss AJ, Wideman C. Deficiency of protein C in congenital thrombotic disease. J Clin Invest. 1981;68:1370-1373.
5. Comp PC, Nixon RR, Cooper MR, Esmon CT. Familial protein S deficiency is associated with recurrent thrombosis. J Clin Invest. 1984;74:2082-2088.
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A common genetic variation in the 3'-untranslated region of the
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